Gene detail information of Glyur000277s00017322 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G03040.3 | 1.00E-112 | IQ-domain 2 |
| NR | XP_003541403.1 | 0 | PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Glycine max] |
| Swissprot | tr|Q9SF32|IQD1_ARATH | 1.00E-96 | Protein IQ-DOMAIN 1 |
| trEMBL | tr|K7LZM0|K7LZM0_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G20070.3} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00277 | 171477 | 176513 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000277s00017322.1 | PF00612.22 | IQ | 115 | 133 | 2.00E-06 |
| Glyur000277s00017322.1 | PF13178.1 | DUF4005 | 360 | 449 | 2.80E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 15.681 |
| SRR1783600 | control | 15.673 |
| SRR1783602 | moderate drought stress | 12.495 |
| SRR1811619 | moderate drought stress | 12.513 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 16.605 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 16.311 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 8.301 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.302 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 18.402 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 18.736 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 21.742 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 21.667 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 73.992 |
| SRR2868004 | Drought Stress (root) | 61.956 |
| SRR2967015 | Control (root) | 54.247 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 16.424 |
| SRR9715740 | Leaf | 9.065 |
| SRR9715741 | Leaf | 17.582 |
| SRR9715739 | Root | 6.162 |
| SRR9715742 | Root | 18.347 |
| SRR9715743 | Root | 17.312 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 27.177 |
| SRR8749028 | MeJA induced 9h | 32.674 |
| SRR8749029 | MeJA induced 9h | 21.541 |
| SRR8749030 | Uninduced | 11.206 |
| SRR8749031 | Uninduced | 8.317 |
| SRR8749032 | Uninduced | 9.946 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 56.001 |
| SRR8400027 | Control - Root | 55.610 |