Gene detail information of Glyur000277s00017319


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G02960.12.00E-72Ribosomal protein S12/S23 family protein
NRCBI32689.38.98E-96unnamed protein product [Vitis vinifera]
COGYP_004004208.12.00E-4930S ribosomal protein S12 [Methanothermus fervidus DSM 2088]
Swissprottr|P46297|RS23_FRAAN7.00E-9740S ribosomal protein S23
trEMBLtr|F6HQZ2|F6HQZ2_VITVI4.00E-96Putative uncharacterized protein {ECO:0000313|EMBL:CCB57041.1}

Sequence

Transcript Sequence
Protein Sequence


Location information (JBrowse)

ScaffoldStartEndStrand
Scaffold00277123698125596-


Gene family

Gene familysubfamily
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KEGG pathway

KOEnzymeEnzyme IDpathwaymapID
----------


Gene Ontology

biological_process

GO:0006412  translation


cellular_component

GO:0005622  intracellular

GO:0005840  ribosome

GO:0015935  small ribosomal subunit


molecular_function

GO:0003735  structural constituent of ribosome

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000277s00017319.1PF00164.20Ribosom_S12_S2391419.70E-41


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control79.665
SRR1783600control79.967
SRR1783602moderate drought stress71.294
SRR1811619moderate drought stress71.304

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain85.223
DRR006520Root Summer glycyrrhizin high producing strain81.940
DRR006521Root Winter glycyrrhizin high producing strain73.766
DRR006522Root Winter glycyrrhizin high producing strain71.876
DRR006523Root Summer glycyrrhizin low producing strain87.078
DRR006524Root Summer glycyrrhizin low producing strain85.099
DRR006525Leaf Summer glycyrrhizin high producing strain36.419
DRR006526Leaf Summer glycyrrhizin high producing strain36.180

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress (root)391.280
SRR2868004Drought Stress (root)252.246
SRR2967015Control (root)244.745

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leaf129.282
SRR9715740Leaf130.603
SRR9715741Leaf130.964
SRR9715739Root153.627
SRR9715742Root135.081
SRR9715743Root130.796

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h492.587
SRR8749028MeJA induced 9h182.604
SRR8749029MeJA induced 9h405.040
SRR8749030Uninduced98.471
SRR8749031Uninduced93.254
SRR8749032Uninduced111.955

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment - Root257.544
SRR8400027Control - Root226.918

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved