Gene detail information of Glyur000277s00017316 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G02950.1 | 9.00E-71 | Tudor/PWWP/MBT superfamily protein |
| NR | KHN48326.1 | 0 | Serine/threonine-protein kinase ATM [Glycine soja] |
| Swissprot | tr|Q9M3G7|ATM_ARATH | 1.00E-11 | Serine/threonine-protein kinase ATM |
| trEMBL | tr|K7LZL6|K7LZL6_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G20000.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00277 | 108588 | 111020 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000277s00017316.1 | PF00855.12 | PWWP | 269 | 354 | 1.70E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.123 |
| SRR1783600 | control | 2.137 |
| SRR1783602 | moderate drought stress | 1.995 |
| SRR1811619 | moderate drought stress | 2.064 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.831 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.832 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.865 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.860 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.962 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.959 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.614 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.567 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.366 |
| SRR2868004 | Drought Stress (root) | 3.322 |
| SRR2967015 | Control (root) | 3.748 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.508 |
| SRR9715740 | Leaf | 1.846 |
| SRR9715741 | Leaf | 1.366 |
| SRR9715739 | Root | 0.478 |
| SRR9715742 | Root | 2.381 |
| SRR9715743 | Root | 1.902 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.571 |
| SRR8749028 | MeJA induced 9h | 1.034 |
| SRR8749029 | MeJA induced 9h | 0.843 |
| SRR8749030 | Uninduced | 0.632 |
| SRR8749031 | Uninduced | 0.410 |
| SRR8749032 | Uninduced | 0.035 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.661 |
| SRR8400027 | Control - Root | 5.432 |