Gene detail information of Glyur000277s00017314 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G09650.1 | 1.00E-53 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| NR | KEH42284.1 | 2.00E-98 | PPR containing plant-like protein [Medicago truncatula] |
| Swissprot | tr|Q9SF38|PP222_ARATH | 4.00E-72 | Pentatricopeptide repeat-containing protein At3g09650, chloroplastic (Precursor) |
| trEMBL | tr|A0A072VJQ9|A0A072VJQ9_MEDTR | 7.00E-99 | PPR containing plant-like protein {ECO:0000313|EMBL:KEH42284.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00277 | 97073 | 99561 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000277s00017314.1 | PF01535.15 | PPR | 179 | 201 | 0.088 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 11.599 |
| SRR1783600 | control | 11.294 |
| SRR1783602 | moderate drought stress | 16.586 |
| SRR1811619 | moderate drought stress | 16.664 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 14.952 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 14.290 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 8.357 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.386 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 14.843 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 14.792 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 28.692 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 28.222 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.169 |
| SRR2868004 | Drought Stress (root) | 7.806 |
| SRR2967015 | Control (root) | 10.114 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 15.693 |
| SRR9715740 | Leaf | 37.358 |
| SRR9715741 | Leaf | 15.681 |
| SRR9715739 | Root | 7.324 |
| SRR9715742 | Root | 8.708 |
| SRR9715743 | Root | 7.157 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 10.096 |
| SRR8749028 | MeJA induced 9h | 7.448 |
| SRR8749029 | MeJA induced 9h | 6.401 |
| SRR8749030 | Uninduced | 3.126 |
| SRR8749031 | Uninduced | 1.280 |
| SRR8749032 | Uninduced | 2.533 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 12.498 |
| SRR8400027 | Control - Root | 12.554 |