Gene detail

Gene detail information of Glyur000277s00017304.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G20280.1	2.00E-113	Zinc finger C-x8-C-x5-C-x3-H type family protein
NR	XP_007157380.1	0	hypothetical protein PHAVU_002G065400g [Phaseolus vulgaris]
Swissprot	tr\|Q0JHZ2\|C3H11_ORYSJ	2.00E-164	Zinc finger CCCH domain-containing protein 11
trEMBL	tr\|V7CGW8\|V7CGW8_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW29374.1}

Sequence

Transcript Sequence

>Glyur000277s00017304.1
GTGTTAAGTGTGTACAGAGGGGTAGATCGGGAATCCCAAATCTCCGTAAAGCTTCTCGAATCTCAACCCCGTGCACGGTCCTAACTCCAAACCCTAACCTAATATCCAAACCAACCCAAACCAACCCAAACCAAACATCCTCGTCCCCGGCAGGCACATCGTCCTCCTCCTCTCACACAATCCTCAATTTCATTGAAACAACACATTAATTTTTTGATGCCGATAAGAGATGCCGCCGAAGCAATCGAAAGCTGATGTAGCTAAGAAGCAGAAGGTCGTAGAGGACAAAACTTTCGGTCTCAAGAACAAAAACAAGAGCAAACAGGTCCAGAAATATGTTCAGAACCTCAAACAATCCGTTCAGCCTAGACCCGATCCTTCNAAACTCGATGCCAAGTCCATACTATGTGAGTTTTTCAAAGCAGGGCAGTGTGCCAAGGGCTTCAAATGCAAGTTCTCGCATGATTTGAATGTTCAGAGGAAAGGGGAAAAGATTGATATATACAGTGATAAGCGTGATGAGGAAACAATGGAGGATTGGGATCAAGAGACCTTGGAGAAGGTGGTGGAGTCAAAGAAAAACGAGTATAATCAGAACAAGCCAACTGACATAGTCTGTAAATACTTTTTGGATGCGGTAGAGAAGAAGCAATATGGTTGGTTTTGGGTCTGCCCCAATGGTGGTAAGAATTGCCACTATAGACATGCACTGCCACCTGGATATGTGTTAAAATCTCAAATGAAGGCTTTGTTAGAGGAAGAAACCGAAAAAATAACAATTGAAGAGGAGATTGAAAATCAGCGTGCCAAAGTGGCCACTACAACTCCTATGACTCCTGAATTATTCTTTCAATGGAAGAAGAAGAAGATGGAAGAGAGAGATGCCAATATGGCTGCACAACAGGCAGAGAGGGCTAAGAATGACCGCATGAGTGGTCGTGAGCTATTTTTGTCGGATGCTAGCTTGTTTGTGGATGATGTTGAAGCTTATGACAAGTACCAAAGAGAGCCAGAATCTTATGAAACTGAACAGAAAGGGAATGAGAATGCTGCTACAAATGGTCCCGGCACCTCGGCAACAGGTGGTGCTGATGCTGAAGTTCCTGATGACATTGACGATGACGATGATGAATTGGACATAGATGAGTTGAATGAACTGGAAGCAAGTTTATCCAAGACATCAATCCAAATAAAGGANCCGGGAGCCGAAGCTTAATCCTGAGAATTAGTCTTTGACCTTGATTTGTGATATTTTTATGCCTCTGCTGAATAATATAGCATTTGCTTGTTGTAGCCATTCTCTTTCCTTGCTTCCAAGGAAGTTTTTTTCTGAATGAAGCTTTTGAGGATAATGAAATCGCTATTGGCAGCATGGCATTTGGTATGGATGGTGACAGTTTGGTAGGATCCCGTTTTCTACAGTTACATCTCTCATTGGACCTACGACAGACATTTTTGTTGTTTGAACACGTGGTCTTGTGCATACTGTACCTTATTTTATTCACCTGAGTTTCCCCTATTGTTTTTATGTGTTGATTTTCCTGAAGCCATCAAAGCATAATGTGATCGCTGTTATGTACTGGATGTTACAGCAGGTATGCTTAGGGAATTNGGGCAACTTCAATGGGGTACTTAAATNGTACCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00277	3608	7811	+

Gene family

Gene family	subfamily
Transcription Factors Family	C3H

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--	--

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	40.794
SRR1783600	control	40.239
SRR1783602	moderate drought stress	42.422
SRR1811619	moderate drought stress	41.760

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	78.308
DRR006520	Root Summer glycyrrhizin high producing strain	77.910
DRR006521	Root Winter glycyrrhizin high producing strain	50.241
DRR006522	Root Winter glycyrrhizin high producing strain	49.199
DRR006523	Root Summer glycyrrhizin low producing strain	63.563
DRR006524	Root Summer glycyrrhizin low producing strain	64.848
DRR006525	Leaf Summer glycyrrhizin high producing strain	39.450
DRR006526	Leaf Summer glycyrrhizin high producing strain	38.430

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	80.179
SRR2868004	Drought Stress (root)	70.152
SRR2967015	Control (root)	62.576

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	75.938
SRR9715740	Leaf	95.573
SRR9715741	Leaf	85.992
SRR9715739	Root	8.660
SRR9715742	Root	42.594
SRR9715743	Root	41.792

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	63.731
SRR8749028	MeJA induced 9h	61.920
SRR8749029	MeJA induced 9h	45.211
SRR8749030	Uninduced	39.537
SRR8749031	Uninduced	38.050
SRR8749032	Uninduced	36.902

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	74.461
SRR8400027	Control - Root	72.583