Gene detail

Gene detail information of Glyur000276s00017177

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT4G20360.1	RAB GTPase homolog E1B
NR	XP_003525588.1	PREDICTED: elongation factor Tu, chloroplastic-like [Glycine max]
COG	YP_007143371.1	translation elongation factor Tu [Crinalium epipsammum PCC 9333]
Swissprot	tr\|P46280\|EFTU2_SOYBN	Elongation factor Tu, chloroplastic (Precursor)
trEMBL	tr\|K7KMT9\|K7KMT9_SOYBN	Elongation factor Tu {ECO:0000256\|RuleBase:RU004061}

Sequence

Transcript Sequence

>Glyur000276s00017177.1
CACAACATTACCCATTAGCCAGTGGACTAGGGTTAGTGAGTGAGTGAGGTGGTGGGGGTTGCGTCCCTCCAAAACAGAGGCAGAAAGAGGATAGAAGTAAGTGATAAGAGGCCCTCCTTTGTTGTATCCATCCACACAAAAAACACAACGGATAACAAAAACATAACAGTTACAACAAAATCCTCTTCTCCATTTCTCACCCAAATTCTCTCTTCTGCTTCAATTCAGTCATGGCAATTTCATCTTCTTCAGCAGCAACAGCTTCTTCCTCAAAACTAGNAAACCCACCACGCCTACGTGCGTCATCCACTTCCGCTTCCCCTTCCACCTCCACAACCTTACGCTCCACCACCCACCACAAACTAACCCGCCTCTCCTCTTCTTTTCTCACCCCTTACACCATCCTCCACGTCACCCCTTCTTCCCGGCGCCACCACCCTTCCTCCTTCACCGTCCGCGCCGCACGTGGCAAATTCGAGCGGAAGAAGCCCCACGTCAACATCGGCACCATAGGCCACGTTGACCACGGCAAGACCACCCTCACCGCCGCCCTCACCATGGCCCTAGCCTCCCTCGGCAACAGTTCCCCCAAAAAGTACGACGAAATCGACGCCGCTCCTGAAGAGCGCGCTCGTGGCATCACAATTAACACTGCCACCGTGGAGTATGAGACCGAAACCCGCCACTACGCCCACGTCGACTGCCCCGGCCACGCCGATTATGTCAAAAACATGATCACCGGCGCCGCCCAAATGGACGGTGCTATCCTCGTCGTCTCCGGCGCCGACGGCCCCATGCCCCAGACCAAAGAACATATCCTGCTAGCCAAACAGGACCAAGTGGACGACGAGGAGCTTCTCCAGCTGGTGGAGCTGGAGGTTCGGGAGCTTCTCTCCTCCTACGAGTTCCCCGGCGACGANGTCCCCATCGTTTCCGGCTCGGCTCTCTTGGCCCTTGAAGCCTTGATGGCCAACCCTTCCCTCAAGCGCGGCGACAACCAGTGGGTGGACAAAATCTACGACCTCATGGACTCCGTGGACAGCTACATTCCCATCCCTCAGCGCCAGACAGAGCTCCCCTTCCTCCTCGCCGTGGAGGACGTGTTCTCCATCACCGGCCGTGGAACCGTCGCCACCGGAAGGGTCGAGAGGGGGACCATCAGAATCGGTGAAACCGTCGAACTCGTTGGGCTCAGGGAAACGAGGAACACAACCGTAACCGGTGTGGAGATGTTCCAGAAGATTCTGGACGAGGCAATGGCAGGGGACAATGTTGGGATTTTGCTGAGGGGTATGCAGAAGGTTGATATTCAGAGAGGGATGGTTTTGGCAAAGCCTGGGACGATTACACCTCACACCAAGTTCACTGCGATTGTGTATGTTCTGAAGAAGGAGGAAGGTGGGAGGCACTCACCTTTCTTTGCAGGGTATAGGCCTCAGTTCTATATGAGGACTACAGATGTTACTGGACGGGTGGCGTCTATCATGAATGATAAGGATGAGGAGTCGAAGATGGTGATGCCCGGTGATCGTGTTAAGATGGTGGTGGAACTTATTGTTCCTGTGGCTTGTGAACAGGGAATGAGGTTTGCTATNAGGGAAGGAGGGAAGACCGTTGGTGCTGGTGTTATCCAATCTATCCTCGAGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00276	187118	189241	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006414 translational elongation

cellular_component
GO:0005622 intracellular

molecular_function

GO:0003746 translation elongation factor activity

GO:0003924 GTPase activity

GO:0005525 GTP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000276s00017177.1	PF00009.22	GTP_EFTU	86	274	3.10E-47
Glyur000276s00017177.1	PF03144.20	GTP_EFTU_D2	298	367	1.20E-17
Glyur000276s00017177.1	PF03143.12	GTP_EFTU_D3	371	470	1.90E-33

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	29.506
SRR1783600	control	29.568
SRR1783602	moderate drought stress	26.626
SRR1811619	moderate drought stress	26.171

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	30.028
DRR006520	Root Summer glycyrrhizin high producing strain	29.066
DRR006521	Root Winter glycyrrhizin high producing strain	6.397
DRR006522	Root Winter glycyrrhizin high producing strain	6.202
DRR006523	Root Summer glycyrrhizin low producing strain	28.902
DRR006524	Root Summer glycyrrhizin low producing strain	29.323
DRR006525	Leaf Summer glycyrrhizin high producing strain	704.140
DRR006526	Leaf Summer glycyrrhizin high producing strain	693.740

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	30.041
SRR2868004	Drought Stress (root)	38.639
SRR2967015	Control (root)	33.264

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	541.824
SRR9715740	Leaf	537.790
SRR9715741	Leaf	366.891
SRR9715739	Root	49.965
SRR9715742	Root	35.066
SRR9715743	Root	31.460

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	19.213
SRR8749028	MeJA induced 9h	23.462
SRR8749029	MeJA induced 9h	9.354
SRR8749030	Uninduced	10.872
SRR8749031	Uninduced	3.118
SRR8749032	Uninduced	5.041

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	29.355
SRR8400027	Control - Root	29.839