Gene detail

Gene detail information of Glyur000276s00017173

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G24710.1	0	P-loop containing nucleoside triphosphate hydrolases superfamily protein
NR	XP_004501872.1	0	PREDICTED: pachytene checkpoint protein 2 homolog [Cicer arietinum]
COG	YP_551923.1	9.00E-34	AAA ATPase, central region [Polaromonas sp. JS666]
Swissprot	tr\|Q8H1F9\|PCH2_ARATH	0	Pachytene checkpoint protein 2 homolog
trEMBL	tr\|I1KCB2\|I1KCB2_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA06G18700.1}

Sequence

Transcript Sequence

>Glyur000276s00017173.1
ATGAGTGCTCCTATGGAGACGGAGCAAAACCCCACAACCCCAACCGTTCAAAACGGCGTCGCTTCCCAACATTCGCCTTCTTCTTCTTCTTCTTCTCTGCTTCCCGAGGACAAAGTTCTTGTCCCTGTCGAGGTATGCTTAAAACCTTCCAGCACAGCTTCCATCCCCGATGTCCGTTTAGCCGTTGAGGGGATGCTTGAAAAGAGGAGTTTGAGCTATAATGATGGACCCATTCCCGTTCCCCTTGATGAACCCTTTCTTGCAGATAACGTGCAAAGGATTTGTGTTTGTGATACAGATGAAGGGATGCAGAATGATAATGTTCTTTTGTTCTGGCAAGTCAAGCCTGTTGTTCATGTCTTTCAGCTTAGTGAGGAAGGACCATGTGAGGACATAAGCTCTGATGGCCAGTCTTCTAGCTTTAATGAATGGATTCTTCCTGCAAAAGAATTTGATGGCATGTGGGAAAGCTTAATATATGAATCTGGTCTAAAGCAACGGTTGTTACGGTATGCAGCGAGTGCTTTGCTCTTTACTGAAAAGGGTGTTGATCCATTCCTTGTTTCATGGAACCGCATAATTCTTTTGCATGGACCTCCTGGGACAGGAAAGACGTCTTTATGTAAAGCATTAGCTCAGAAACTATCAATTCGATTCAATTTGAGATACCCACAGTGCCAGCTTGTTGAAGTGAATGCACATTCTTTATTCAGTAAATGGTTCTCCGAAAGTGGCAAGCTGGTAGCAAAACTATTCCAAAAGATTCAAGAAATGGTAGAGGAAGAAAGCAATCTGGTATTTGTTTTGATCGATGAAGTTGAAAGCCTTGCTGCTGCTAGAAAAGCTGCTTTATCTGGTTCTGAACCTTCGGATTCTATTCGGGTTGTCAATGCTTTACTAACACAGATGGATAAGTTAAAATCATCTCCAAATGTGATAATTCTAACCACATCCAACATAACTGCTGCTATTGATATTGCTTTTGTTGATCGAGCTGATATCAAAGCATATGTTGGCCCACCAACTCTTCAAGCTCGGTATGAAATATTAAGGTCTTGCTTGCAGGAACTGATGCGTACAGGGATATTAACTAGTTTTCAGGATTGTAAGAATGTCGTGCTCCCAAATTATGCTACTGCAAGGGGGAGGTTGAACGCACCAGATTTTCATGAGGCTACTACATCCATGCAACTGTGCAAGCAACTACTTGAAACCGCAGAGGCATGTGAGGGAATGAGTGGAAGGTCTTTGAGAAAGCTTCCATTTTTGGCACATGCTGCACTTGCAAATCCTTTTGAATGCAACCCTATTAAGTTCTTATGTACAATGATAGAAACAGCAAAGAGGGAGCGTTCTGAGCTTCCTGACTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00276	165105	169654	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000276s00017173.1	PF00004.24	AAA	194	339	8.80E-34

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.771
SRR1783600	control	0.910
SRR1783602	moderate drought stress	0.513
SRR1811619	moderate drought stress	0.531

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.842
DRR006520	Root Summer glycyrrhizin high producing strain	0.775
DRR006521	Root Winter glycyrrhizin high producing strain	0.821
DRR006522	Root Winter glycyrrhizin high producing strain	0.640
DRR006523	Root Summer glycyrrhizin low producing strain	0.691
DRR006524	Root Summer glycyrrhizin low producing strain	0.692
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.643
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.423

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.073
SRR2868004	Drought Stress (root)	2.300
SRR2967015	Control (root)	2.774

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.282
SRR9715740	Leaf	0.880
SRR9715741	Leaf	1.745
SRR9715739	Root	0.843
SRR9715742	Root	0.586
SRR9715743	Root	0.299

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.288
SRR8749028	MeJA induced 9h	3.228
SRR8749029	MeJA induced 9h	4.186
SRR8749030	Uninduced	1.524
SRR8749031	Uninduced	0.304
SRR8749032	Uninduced	0.202

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.883
SRR8400027	Control - Root	3.237