Gene detail information of Glyur000276s00017171.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G50180.1 | 5.00E-156 | Protein kinase superfamily protein |
| NR | XP_003526999.1 | 0 | PREDICTED: serine/threonine-protein kinase HT1-like [Glycine max] |
| COG | NP_623114.1 | 9.00E-30 | Serine/threonine protein kinase [Thermoanaerobacter tengcongensis MB4] |
| Swissprot | tr|Q2MHE4|HT1_ARATH | 8.00E-73 | Serine/threonine-protein kinase HT1 |
| trEMBL | tr|I1KCB5|I1KCB5_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G18730.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00276 | 155424 | 159300 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | PPC:2.1.5 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000276s00017171.1 | PF07714.12 | Pkinase_Tyr | 30 | 286 | 3.20E-59 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 23.002 |
| SRR1783600 | control | 23.029 |
| SRR1783602 | moderate drought stress | 27.943 |
| SRR1811619 | moderate drought stress | 27.988 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 34.134 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 34.216 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 28.833 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 28.435 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 41.535 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 41.851 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 32.611 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 32.460 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 23.602 |
| SRR2868004 | Drought Stress (root) | 18.844 |
| SRR2967015 | Control (root) | 25.710 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 13.148 |
| SRR9715740 | Leaf | 21.818 |
| SRR9715741 | Leaf | 15.693 |
| SRR9715739 | Root | 10.423 |
| SRR9715742 | Root | 13.493 |
| SRR9715743 | Root | 12.812 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.263 |
| SRR8749028 | MeJA induced 9h | 6.336 |
| SRR8749029 | MeJA induced 9h | 3.708 |
| SRR8749030 | Uninduced | 4.638 |
| SRR8749031 | Uninduced | 1.053 |
| SRR8749032 | Uninduced | 1.256 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 26.557 |
| SRR8400027 | Control - Root | 24.357 |