Gene detail

Gene detail information of Glyur000276s00017170

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G71460.1	Pentatricopeptide repeat (PPR-like) superfamily protein
NR	XP_004507080.1	PREDICTED: pentatricopeptide repeat-containing protein At1g71460, chloroplastic-like [Cicer arietinum]
Swissprot	tr\|Q9C9I3\|PP115_ARATH	Pentatricopeptide repeat-containing protein At1g71460, chloroplastic (Precursor)
trEMBL	tr\|K7LFV1\|K7LFV1_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA09G37956.1}

Sequence

Transcript Sequence

>Glyur000276s00017170.1
ATGGATAACTCTGTTTCTCTCTCCTTGCGTTTCCCTCCAAACCCCATCCCCAACCTCTTCCAAGTCTTCAGCTTCAGACCTTCCCCATCACCATCGTCCATCGAATCACCCACCAGAACCCACCACAGAGAACTGCCCAAATTCACCACCAAGCACAACAACAACAAGGCGAAGCCATTCTCNGAAGAAGACGCTTTCCCATGCTCCTTACCCCTCCACAACAAGAACCCACATTCCATTTACAATGACATTAAGAACTTCGCTCGCCAAAACAAACTCAAAGAGGCTCTCACCATCTTGGACTACGTGGACCAACAGGGTATCCCTGTAAACCCCACAACCTTCTCTTCCCTCATTGCTGCTTGCATCCGCACCAAGTCACTGTCACAAGGAAGGGAAGTTCATACCCACATTCGAATCAATGGGCTCGAAAAAAACGATTTTTTGCGCACAAAACTTGTTCATATGTACACNTCCCTTGGGTCCTTGGAAGAAGCAAGGAAGCTGTTTGATGAATTGCCCAGTGAGAGTGTGTATCCATGGAATGCTTTACTCAGAGGGACTGTGATTTCGGGTAAGAGAAATTACACTGATGTGCTCAACACTTACTCAGAGATGAGGGCATTGGGGATTGAGTTGAATGTGTATAGTTTCTCTAGTGTCATCAAGAGCTTCGCCGGTGCTCCTTCGCTTTCGCAAGGGTTGAAGGTTCATGCCCTTTTGATCAAGAACGGTTTGGTTGATAGCCCCATTCTCAGGACTAGTTTGATTGACTTGTACTTTAAGTGTGGTAAAGTTAGGCTTGCGGGCCGCATGTTTGAGGAAATTTCCGAGAGGGATGTTGTTGTGTGGGGAGCTATGCTTGCCGGTTTCGGGCACAATAGGTTGCAGAGGGAAGTATTGGAGTATGTAAGGTGGATGGTTGACGAAGGAGTAAAGCCGAATTCGGTTATAATGACGATTGTGATTCCTGNAATTGGGGAAGTTTGTGCACGGAGGTTGGGGCAGGAGGTTCATGCTTATGTAGTGAAGACAAAATCTTACTTCAAGAAAGTTCCAATTCAATCTGCTCTGATTGATATGTATTCCAAGTGTGGGGATTTGAGTTCAGCAAGACGAGTTTTTTATAGCTCATTGGAGAGGAATGTTGTTTGTTGGACGGCTCTTATGTCGGGTTATGCTTCTAGTGGAAGACTAGAGCAGGCACTGAGGTCCACAATTTGGATGCAGCAAGAAGGGTTCAGGCCTGATGTGGTCACAGTTGCCACTGTTCTTCCAATTTGTGCTCAGTTGAGGGCTATGGAACAAGGGAAACAGGTTCATGCTTATGCTTTGAAACATTGGTTTCTGCCTAATGTATCGATAACTACTTCGTTGATGGTAATGTATTCTAGGTGCGGTGTGGTCGAGTATTCTGCAAGACTATTTGATAATATGGAGCAAAGGAACGTGATTTCATGGACAGCCATGATTGATTCATACATCGNAAATGGGTATCTGTGTGAAGCACTTGGTGTGATAAGGTCAATGCAGTTGTCAAGACANAGGCCAGACACAGTTGCCATATCAAAGATGTTGAGTGTTTGTGGTGAGCTAAGACTTTTAAAGCTTGGGAAGGAGATTCATGGGCAGATCTTGAAAAGGGATTTTGCATCAGTCCATTTTGTTTCTGCTGAACTCATCAACATGTATGGCACTTTTGGAGATGTTAATAAGGCAAAGTTGGTGTTTGATGCAGTTCCAGTTAAAGGGTCTATGACATGGACTGCTCTTATAAGGGCCTATGGATATAATGAGTTTTATCAAGATGCAATTGACCTTTTTGATCAGATGAGATCAAATGGTTCTTCTCCAAACCACTTCACATTTGAAGCCATTCTATCTATATGTGACAGAGGTCGGTTTGTCAATGATGCTTGTAAAATCTTCAATTTAATGCCTAAATATAAAATTGAAGCATCTAAGGAACACTATGCTATAATGGTCCGGCTTCTTACCCGATATGGTCAAGTAGAGAAGGCTCAAAGATTTTTACAAATGAGTTCTTCCTTATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00276	149585	151639	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000276s00017170.1	PF01535.15	PPR	153	176	0.22
Glyur000276s00017170.1	PF01535.15	PPR	254	280	0.024
Glyur000276s00017170.1	PF13041.1	PPR_2	382	425	6.20E-09
Glyur000276s00017170.1	PF01535.15	PPR	485	511	0.00023
Glyur000276s00017170.1	PF13041.1	PPR_2	584	628	3.70E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.925
SRR1783600	control	0.978
SRR1783602	moderate drought stress	1.286
SRR1811619	moderate drought stress	1.277

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.583
DRR006520	Root Summer glycyrrhizin high producing strain	1.563
DRR006521	Root Winter glycyrrhizin high producing strain	0.217
DRR006522	Root Winter glycyrrhizin high producing strain	0.189
DRR006523	Root Summer glycyrrhizin low producing strain	1.856
DRR006524	Root Summer glycyrrhizin low producing strain	1.921
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.720
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.456

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.788
SRR2868004	Drought Stress (root)	1.377
SRR2967015	Control (root)	1.568

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.868
SRR9715740	Leaf	2.410
SRR9715741	Leaf	1.993
SRR9715739	Root	1.150
SRR9715742	Root	2.094
SRR9715743	Root	2.372

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.403
SRR8749028	MeJA induced 9h	1.463
SRR8749029	MeJA induced 9h	0.725
SRR8749030	Uninduced	0.320
SRR8749031	Uninduced	0.073
SRR8749032	Uninduced	0.221

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.727
SRR8400027	Control - Root	1.694