Gene detail

Gene detail information of Glyur000276s00017167

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G50170.1	C2 calcium/lipid-binding and GRAM domain containing protein
NR	XP_003522401.1	PREDICTED: C2 and GRAM domain-containing protein At5g50170-like [Glycine max]
Swissprot	tr\|Q9FGS8\|C2GR2_ARATH	C2 and GRAM domain-containing protein At5g50170
trEMBL	tr\|I1JXB5\|I1JXB5_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA04G36180.1}

Sequence

Transcript Sequence

>Glyur000276s00017167.1
ATGTTGAGGTTATATGTGTGTGTATTGGAAGCCAGAGACTTGCCGGTGAGGGACTCGTGTGTGAAGCTGAAACTTGGGAAGAAGTTTAAGTCCAAGAGTACGAGGGTATTGAGGAACACGTGCAGCCCCATTTGGAACGAGGAGTTTGTGTTCAGGGTGCATGAAGAGGACGTGCTTGTTGTCACTGTTGTTAATCGCAGTGATGAAATTTCTTCCAGGGTGGTGGTGATCAACAAGGGTACTCGTGTGGATTCTCTGGTGGGTGAGGTACGGATTCCGGTAGGTTCAGTTGCTTTTGAGGATAAGCAAACCTTGCCGCCAACGTGGTTCTCCCTTCACAGTCCCAAGAGTGGGAGATTTTTCAATAAATATTGTGGGAAGGTTCTCCTTACCATTTCTCTTCATGGTAAGTGCCATGCTTCTTCTATGAATCACAAGCATTCTCCGAAGTCAACTATTGCAATTGAGGACTCAAAAGACTTGGAAGGTCTGCACATTTCATCTCAGGCACCTTGTTCTAAAATGGGTGAAGGCAAACAGTTGTTAAAGGTTATTACCAATCGTCTCGATAGGTTTTTCAATAAGAAGGAAGGAAACTCAACAAAACCTGGGGATTCTTCTTCAGAACCATCCAATTCATTGTCTGATTATGAAGATAGTAGTAGTAGTGCACAGGAAAATTCATCCCCTTGTAGCTTTGAAGAAGCCATTGCAATAATGCAGTCAAGAGATAATAACAAACAAGAAAGTCCTGAAAATCTGCAGGGTGGTATTCTGGTAGATCAGATTTATGCAGTAACTCCATATGACCTTAATGTAGTTCTTTTTGCACCCAATTCACAGTTTAGGAAAGATTTGGCAGAACTACAAGGAACAACAAATATGCAAGAGGGGCCTTGGACCTGGAAAGATGGAGACGCGTCTTGTTTGACTCGGGTTGTTTCCTATACAAAAGCTGCTACAAAATTAGTTAAGGCTGTCAATGCCACTGAGGAGCAAACCTACATTAGAGTGACTAAAGAGGAATTTGCTGTACTTGTTAGTGTAAGCACCCCTGAGGTTCCATATGGGAATGCATTTCGGGTCGAATTGCTTTACAAGATAATGCCTGGAGGAGACATGTCTTCTGGAGAGGAGTCCTTATCCTCCCATCTTGTGGTATCATGGGGCATTGTCTTCCTCCAAAGCACAATGATTAAAGGCATGATAGAGAGTGGAGCTAGACAAGGTTTGAAGGAGAGTTTTGACCAGTTTTCCAACCAACTTGCTCAGAATTTCAAGGTGCTAGATAAGGCAGATTTATCAGGCAAGGAACACTTGTTGGCAAATTTGCAGACAGAAGACCAGTGGAACTGGTGGCAGGCAATCAAATACTTTTGGAATTTCACAGTAGTTTCCACCATTTTCATGTTTTTGTATGTGTTGGTGCATATTTTAAGATGTGGTCCAAGTCAACCTCAGGGCTTGGAGTTTAGAGGGATTGAATTGCCAGATAACTTAGGAGAACTCGTTACAAGTGGAATTTTGATCATCCAGTTACGGCGTGTTTTTAATATGGTCTCTCACTTTGTGCAAGCTAGATTTCAAATGGGAACTGACCATGGCCTAAAATCAAATGGAGANGGATGGGTTCTTACTGTGGCTGTAATTGAAGGGGTTGACCTGGCCTCGTTGGAGTCAACAGGGTTGTCAGATCCCTATGTGGTTTTCACCTGTAATGGACAAACAAGGTCAAGCTCTGTCATGCTTCAAACGTCCGATCCTCAATGGAATGAGATATTAGAGTTTGATGCTATGGAAGAACCGCCATCAGTTTTAGCTGTGGAAGTTTTTGATTTCGATGGTCCATTTGACCAAGATGTTTCACTTGGACATGCTGAGATCAATTTCCTAAAGAACACATCAACAGAATTAGCAGACATGTGGGTCATGCTTGAAGGAAAGCTCGCCCAGTCTTCTCAATCAAAGTTGCATTTGAGAATTTTCTTGGACAATAATAAAGGAGTTGAAACAATCAAGGAATATTTGGAGAAGAAGGAAAAGGAAGTAGGCAAAAAGTTGAATCTTCGATCACCTCAAAGGAATTCTACATTTCAGAAGCTGTTTGGGTTGCCTCCAGAAGAATTTCTAATCAATGATTTCACATGTTACCTGAAGAGGAAAATGCCTTTACAGGGTCGGCTGTTTCTTTCAGCAAGGATTCTGGGGTTTTATGCCAATTTGTTTGGACATAAAACCAAATTTTTCTTCCTTTGGGAAGATATTGAAAACATTCAAGTGCTTCCTCCATCCTTGGCATCAATAGGAAGCCCTACATTGGTCATAATTCTCCGAAGAGGTCGAGGTATTGATGCAAGACACGGTGCAAAGATGCAAGATGAAGAAGGGAGACTTAGGTTTCATTTTCAATCATTTGTTTCATTCAGTGCTGCCTCCAGGTATTAGTCAGCGTGCTTATACTTCTAATCTTATCCACACATTCAACTGACAACACACTTTGTTTCTACAAAAGAACAATAATGGCCTTGTGGAGAACAAGAATACTGAACCCCTATCACAAAGAACAAGTTACAGAAGAGCATGAAGATCAGGAAGCCTTTGTAATTCCTGAAGACTCTGGATCCATCCTAGAGGATGAAGCAAAAATGTCCAGGATTTACTGTGCAGAACTTCCAATTAAAATGATATCAGTGATGGGAATTTTTGATGGAGGAAACCTAGAACATAAAATTATGAAGAGAACTGGATGTATAAACTATGAAACTACAGCTTGGGAACTAGTAAAGTCTGATGTCCTCGAAAGGCGTGTTTCTTACCGATTCAATCGGCACGTGTCAGTTTTTGAAGTCATAAGCACACAACAAAAGTTTCCAAATCCAAACACTGGAGGCTGGGTTGTGAATGAAGTTATGGTCCTTAACGGTGTCCCATTTGCTGATCACTTCCGTATTCATTTTAGGTATGAAATTGAGAAATCAGCTCTTGGTGAATGTGCTTGCAAGTGTGATGTATACATTGGTATTATGTGGCTTAGGAGCTCCAAGTTTCAGCAAAGGATCAACAGGAACATAACAGCAAAGTTTAATATTAGACTGAAGGAAATATTTGAACTGGTTCAGAAAGAGATTTTATTGATGTCTCAGAACTCGCATGGGTAAGGTTGCCACCTGAATTGAATGGATAAAAATTGTATCAGGGAGAACTAAAAAAATGTAATTTGTACTTGGTAAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00276	137687	142761	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000276s00017167.1	PF00168.25	C2	4	71	9.10E-11
Glyur000276s00017167.1	PF00168.25	C2	545	626	1.20E-12
Glyur000276s00017167.1	PF02893.15	GRAM	698	759	8.50E-16
Glyur000276s00017167.2	PF00168.25	C2	4	71	9.10E-11
Glyur000276s00017167.2	PF00168.25	C2	545	626	1.20E-12
Glyur000276s00017167.2	PF02893.15	GRAM	698	759	8.50E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.365
SRR1783600	control	2.450
SRR1783602	moderate drought stress	2.151
SRR1811619	moderate drought stress	2.146

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.634
DRR006520	Root Summer glycyrrhizin high producing strain	0.587
DRR006521	Root Winter glycyrrhizin high producing strain	0.275
DRR006522	Root Winter glycyrrhizin high producing strain	0.269
DRR006523	Root Summer glycyrrhizin low producing strain	0.760
DRR006524	Root Summer glycyrrhizin low producing strain	0.765
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.323
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.684

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.618
SRR2868004	Drought Stress (root)	0.575
SRR2967015	Control (root)	0.537

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.964
SRR9715740	Leaf	2.355
SRR9715741	Leaf	1.190
SRR9715739	Root	0.344
SRR9715742	Root	1.515
SRR9715743	Root	1.375

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.101
SRR8749028	MeJA induced 9h	0.228
SRR8749029	MeJA induced 9h	0.018
SRR8749030	Uninduced	0.060
SRR8749031	Uninduced	0.023
SRR8749032	Uninduced	0.059

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.297
SRR8400027	Control - Root	1.962