Gene detail

Gene detail information of Glyur000276s00017160.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G42490.1	0	Copper amine oxidase family protein
NR	XP_004501882.1	0	PREDICTED: copper methylamine oxidase-like [Cicer arietinum]
COG	YP_007125935.1	0	Copper amine oxidase domain-containing protein [Gloeocapsa sp. PCC 7428]
Swissprot	tr\|Q43077\|AMO_PEA	5.00E-69	Primary amine oxidase (Precursor)
trEMBL	tr\|G7J4S8\|G7J4S8_MEDTR	0	Copper amine oxidase, enzyme domain protein {ECO:0000313\|EMBL:AES71446.1}

Sequence

Transcript Sequence

>Glyur000276s00017160.1
CTCTGGTCTTTCTCTGCAGCACTAGTGCTTGCTTCTTTTGGTTGTTCCTCTTTTTTTCTTCTCTATTGTGTGTGTGTGTGTGTGTGTGTTGCAGATCACGTTTGCGCGGTGGAAGAGAGGAGGAAGAGGGTGAGTTACCCTACCTGCATGTCAGTGTACTGCGTTGAGACCTATTGCGGCGGTGGAATCGGCGAGATAGCGAACCCTTTGCAATGGCCCCAGCTTCGCAAAAGGCGACGCCACCATCGTCTTCTCCTTGTTGTCCCCCCGNCGACTCTTCCCGCCTAGCCACCGCGCCGCAGGATTGGACTGCCGCCGCCGCCGTCCCCGCCGATTCCCTTCCCAACAACAAGGTTGCCTTGATTCGCCCCCTCGATTCGCTTCCAGAATCTTCCACCAGTGCCCCTACCTCCAAGGGAATCCCTCCAATGATAAGGGCCCAGTCAAGCCACCCTTTGGACCCTTTATCTGCCGCTGAAATCTCTGTGGCAGTGGCAACTGTGAGGGCTGCTGGAGCCACTCCCGAGCTTAGAGATAGTATGCGCTTCATTGAAGTAGTTTTGCTGGAACCAGATAAACATGTTGTTGCACTGGCGGATGCTTATTTTTTTCCACCTTTCCAACCATCATTACTTCCGAGAACTAAAGGAGGGCCTGTAATTCCCACTAAACTCCCTCCAAGATGTGCTAGACTTGTTGTTTACAATAAGAAATCAAATGAGACTGCTTTATGGATTGTTGAATTATCACAAGTACATGCAGTAACTCGAGGAGGTCATCACCGAGGAAAAGTAGTTTCATCACACGTTGTTCCTAATGTTCAGCCTCCAATGGATGCTGAGGAATATGCAGAATGTGAGGCTGTTGTTAAAAATTTCCCCCCATTTATAGAGGCTATGAAGAAAAGGGGTATTGAAGACATGGAACTTGTAATGGTTGATCCCTGGTGTGTTGGTTATTACAGTGAAGCTGATGCTCCTGGTCGAAGACTTGCTAAACCACTTATATTTTGTCGATCTGAGAGTGACTGCCCTATGGAAAATGGCTATGCCCGCCCAGTTGAAGGTGTCTTTGTTCTTGTTGATATGCAAAACATGGTGGTGATAGAGTTTGAAGATCGTAAACTTGTTCCTCTGCCTCCGGTTGATCCCTTGAGGAACTATACTCCTGGTGAAAGCAGAGGTGGCTCTGATAGAAGTGATGTAAAACCCTTGCAAATTATTCAGCCTGAAGGTCCAAGCTTTCGTGTCAATGGATATTATGTTGAATGGCAGAAGTGGAATTTTCGTATTGGATTCACACCCAAAGAAGGTTTGGTTATATATTCTGTTGCATATGTTGATGGTAGTCGAGGGAGAAGGCCCGTTGCTCATAGGCTGAGTTTTGTGGAGATGGTTGTACCCTATGGAGATCCAAATGACCCACATTACAGAAAAAATGCTTTTGATGCTGGGGAAGATGGCTTGGGAAAAAATGCACATTCCCTCAAGAAGGGATGTGATTGTTTGGGCTACATCAAATATTTTGATGCTCACTTCACAAATTTCACTGGTGGAGTGGAAACAATTGAAAATTGTGTATGTTTGCATGAAGAAGATCATGGGATTCTCTGGAAGCATCAAGACTGGAGAACTGGCTTAGCAGAAGTCCGAAGGTCTAGNAGACTTTCAGTTTCTTTTATATGTACTGTGGCTAACTATGAGTATGGATTTTTTTGGCACTTTTATCAGGCAAGTAGGGATGGAAGGATTGAAGCTGAAGTCAAGCTAACTGGAATTCTCAGCTTAGGAGCCTTGATGCCTGGAGAGTTTCGAAAATATGGAACCATGATTGCCCCAGGTCTATATGCTCCAGTTCATCAACACTTTTTTGTTGCTCGCATGGACATGTCTATTGATTCTAAACCTGGTGAAGCTTTCAATCAGGTTGTGGAGGTCAATATGAAAGTTGAGGAACCTGGTGAGAATAATATTCACAATAATGCATTCTATGCCGAAGAGACTTTACTCAGATCTGAATTGGAAGCAATGCGTGATTGCAATCCTTTGACTGCTCGACATTGGATTGTAAGGAACACGAGAACTGGCAATAGAACTGGGCAATTAACAGGCTACAAGCTGGTACCCGGCTCAAACTGCTTGCCATTGGCAGGTTCTGAGGCCAAGTTTTTAAGAAGAGCAGCATTCTTGAAGCATAATCTTTGGGTAACAGCATATTCACGTGATGAAATGTTTCCTGGAGGAGAATTTCCTAATCAAAATCCACGAGTTGGCGAAGGACTAGCTACATGGGTTAAACAGAACCGATCTCTGGAAGAAACTAACATAGTTCTTTGGTTTTTTTTTGGAATCACGCATGTTCCACGTCTAGAAGACTGGCCTGTTATGCCAGTAGAACGCATTGGTTTTATGCTCATGCTCCCTTCTTTTTTTTTTTCTCATGGATTCTTCAATTGTTCCCCTGCAGTAGATGTCCCACCTAGTCCATGTGAAGTGGAATCTAAAGATAGTGACATTAAGGATATTTTTTTTTCGAAGCCAATTCAGAGTGTGTTAGCGGCAAAGCTTTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00276	96469	102904	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00276	AOC3, AOC2, tynA	EC:1.4.3.21	Glycine, serine and threonine metabolism	map00260
			Tyrosine metabolism	map00350
			Phenylalanine metabolism	map00360
			beta-Alanine metabolism	map00410
			Isoquinoline alkaloid biosynthesis	map00950
			Tropane, piperidine and pyridine alkaloid biosynthesis	map00960

Gene Ontology

biological_process

GO:0009308 amine metabolic process

GO:0055114 oxidation-reduction process

molecular_function

GO:0005507 copper ion binding

GO:0008131 primary amine oxidase activity

GO:0048038 quinone binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000276s00017160.1	PF02727.11	Cu_amine_oxidN2	80	125	1.10E-06
Glyur000276s00017160.1	PF02728.11	Cu_amine_oxidN3	205	308	5.40E-34
Glyur000276s00017160.1	PF01179.15	Cu_amine_oxid	333	757	7.60E-152

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	18.601
SRR1783600	control	18.947
SRR1783602	moderate drought stress	16.694
SRR1811619	moderate drought stress	16.970

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.205
DRR006520	Root Summer glycyrrhizin high producing strain	11.815
DRR006521	Root Winter glycyrrhizin high producing strain	5.864
DRR006522	Root Winter glycyrrhizin high producing strain	5.788
DRR006523	Root Summer glycyrrhizin low producing strain	11.096
DRR006524	Root Summer glycyrrhizin low producing strain	11.675
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.645
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.872

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	51.089
SRR2868004	Drought Stress (root)	54.102
SRR2967015	Control (root)	60.200

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.673
SRR9715740	Leaf	8.134
SRR9715741	Leaf	23.505
SRR9715739	Root	5.183
SRR9715742	Root	14.426
SRR9715743	Root	12.935

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	15.014
SRR8749028	MeJA induced 9h	23.671
SRR8749029	MeJA induced 9h	10.891
SRR8749030	Uninduced	39.983
SRR8749031	Uninduced	25.601
SRR8749032	Uninduced	12.511

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	56.973
SRR8400027	Control - Root	55.512