Gene detail

Gene detail information of Glyur000276s00017154.2

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G24670.2	6.00E-136	tryptophan aminotransferase related 2
NR	XP_007138030.1	0	hypothetical protein PHAVU_009G175300g [Phaseolus vulgaris]
COG	YP_005269294.1	2.00E-10	aminotransferase class I/II [Acetobacterium woodii DSM 1030]
Swissprot	tr\|Q94A02\|TAR2_ARATH	3.00E-170	Tryptophan aminotransferase-related protein 2
trEMBL	tr\|V7AWR7\|V7AWR7_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW10024.1}

Sequence

Transcript Sequence

>Glyur000276s00017154.2
ATGAGCTATTTCTCTGACGTGTCAAACATATGCTGGTTTCTGGAGGCAGAGTTTGCAAAGGAGGTAGTGAGGTTGCACAGAGTGGTCGGGAATGCAGTCACAGAGGGACGTCACATTGTTGTTGGGACTGGTTCCTCTCAGCTCTTTCTGGCTGCTCTCTATGCTCTGTCCCCTCCTCACGCTCCTGATCCAATCAGNGTTGTCTGTGCCTCCCCTTACTACTCGTCCTACCCATCGATGACGGATCACCTGAAATCTGGGCTTTACAAATGGGGTGGTGATGCAAAAAGTTTTAACAAAGAGGGACCCTACATTGAGCTGGTTACTTCTCCCAATAATCCTGATGGACATGTAAGGCGGTCAACGGTCAACAGAAGCCAGGGACTTTTGGTTCATGACCTTGCCTATTACTGGCCACAATACACTCCAATATCATCCCCTGCAGATCATGATCTAACNCTTTTCACAGTCTCAAAAAGCACTGGTCATGCAGGAATGCGCATTGGGTGGGCTCTTGTCAAAGACAAAGAGGTAGCAAAGAAAATGACTAAATTCATAGAGCTCAACACAATAGGAGTCTCAAAGGACTCGCAATTCAGGGCTGCTAAGGTTTTAAGGGCAGTTTCTGATAGCTGTGAACAAGGAAACTCCCAAGAGGGAGAGTCATTCTTCAACTTCAGCCACAAGCTCATGGCAAACAGGTGGAAGCAGCTGAGAGTAGTAGTGGAGCGTAGTGGATTGTTCAGTGTGCCCAAATTTTCTCCAGCTTTCTGCAATTTTTTCAATCAGGTGTTGGAGCCTCAACCAGCTTTTGTGTGGTTAAAGTGTGAGGAAAATAATGTGGAAGACTGTGAAAGCTTCCTTCGAGCACACAACATCATAACAAGAGGTGGAACACACTTTGGGGTTAGCCCAAAATATGTCAGAATTAGCATGTTGGATACTGATGAAAATTTTACTCAGTTTCTAGATAGACTATCTGCCATACAGTCTTGATAATTGAAGTTTGTTGCTGGTAATATATGTATACTAGTAAGTGTTAGTTCGGATATATTTTGTGTCTGCTGTAAAGTATAGCAAAGCAATTTTGGCGATCCATGTATAAGATTTCTGGGTCTTGCAGATCATCCTTTGGTACAATCGAATCTAGTCCATTTTTAAACCGAGTAGATGTATAGACTTTACAGTTTACACTATAATGAAATAACT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00276	33001	37445	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K16903	TAA1	EC:2.6.1.99	Tryptophan metabolism	map00380
			Tryptophan metabolism	map00380

Gene Ontology

molecular_function

GO:0003824 catalytic activity

GO:0016846 carbon-sulfur lyase activity

GO:0030170 pyridoxal phosphate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000276s00017154.2	PF04864.8	Alliinase_C	1	329	8.30E-137

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.237
SRR1783600	control	3.116
SRR1783602	moderate drought stress	5.889
SRR1811619	moderate drought stress	5.906

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.240
DRR006520	Root Summer glycyrrhizin high producing strain	6.199
DRR006521	Root Winter glycyrrhizin high producing strain	4.233
DRR006522	Root Winter glycyrrhizin high producing strain	4.504
DRR006523	Root Summer glycyrrhizin low producing strain	3.816
DRR006524	Root Summer glycyrrhizin low producing strain	3.657
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.672
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.698

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.145
SRR2868004	Drought Stress (root)	7.367
SRR2967015	Control (root)	11.166

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.021
SRR9715740	Leaf	1.092
SRR9715741	Leaf	1.019
SRR9715739	Root	0.186
SRR9715742	Root	1.872
SRR9715743	Root	2.320

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.731
SRR8749028	MeJA induced 9h	2.058
SRR8749029	MeJA induced 9h	0.321
SRR8749030	Uninduced	0.824
SRR8749031	Uninduced	0.161
SRR8749032	Uninduced	0.534

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.342
SRR8400027	Control - Root	5.774