Gene detail

Gene detail information of Glyur000276s00017151

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G40390.1	0	Raffinose synthase family protein
NR	XP_003601214.1	0	Galactinol-sucrose galactosyltransferase [Medicago truncatula]
COG	YP_004464004.1	2.00E-44	raffinose synthase [Mahella australiensis 50-1 BON]
Swissprot	tr\|Q8VWN6\|RFS_PEA	0	Galactinol--sucrose galactosyltransferase
trEMBL	tr\|G7J4U7\|G7J4U7_MEDTR	0	Galactinol-raffinose galactosyltransferase {ECO:0000313\|EMBL:AES71465.1}

Sequence

Transcript Sequence

>Glyur000276s00017151.1
ATGGCTCCAAGCTTAACCAAAAATGCGACCCTAGACGTAATGGGGCTCGTCGATGGCAACTTACCCTTATCCATAACCTTAGAAGGATCACGTTTCCTGGCAAACGGCCACCCTTTCCTCACCGAAGTCCCAGGTAACATAACAGCTACCCCTTCACCCTTCCTCTATCTGAAATCCACGGAAAATGCGAACAAGAGCACTCCGGTNGGCTGCTTCGTGGGGTTCGACGCGACCGAGCCCAAGAGCCGGCACGTGGTTCCACTTGGCAAGCTTAGGAACATCCGGTTCATGAGCATCTTCCGGTTCAAGGTGTGGTGGACCACTCACTGGGTCGGAAGCAACGGACACCAAATGGAGCACGAGACGCAGTTGATGATCCTCGACAAAAACGACTCACTGGGCCGGCCCTACGTTATGCTGCTACCCATAATAGAAGGCCCATTCCGGGCCTCGCTCCAACCCGGTTTCGATGACTGCGTGGAGAGCGGTTCGACACGTGTCAGTCGGTCACGCTTCAGGAGCTGTCTATACGTCCACGTGGGCGATGACCCGTACCGTTTGGTGAAGGAGGCCGTTAGGGTGATTCGGGTTCACCTGGGTACCTTCAAGCTTCTTGAAGAGAAAACCCCACCGGGTATCGTGGACAAGTTCGGGTGGTGCACGTGGGACGCGTTTTACTTGAAGGTGAACCCGAAAGGGGTGTGGGAAGGTGTGAAGGGTCTCACCGAGGGTGGGTGCCCTCCAGGTTTGGTCCTAATCGATGACGGGTGGCAGTCCATTTGTCACGATGATGATGACCCAAACNCGAACCAGGAGGAAGGGATGAACCGAACCTCTGCTGGGGAGCAAATGCCATGTAGGCTCGTTAGGTTTGAGGAGAATTACAAGTTCAGGGAGTACAATAGTCCAAGTGGGGGTGGGGGTGTGGGTATGGGTGCGTTTGTTAGGGATTTGAAGGAGGAGTTTAGGACCGTGGAGCAGGTGTATGTTTGGCACGCGCTTTGTGGGTATTGGGGTGGGATCCGACCCAGAGTGCCTGGGATGCCCGAGGCTGAGGTGGTTGCTCCGAAGCTGTCTCCGGGGCTGCAGATGACGATGGAGGATNTGGCGGTGGATAAGATAGTGAACAACGGTGTGGGGTTGGTGCCACCGCACCTAGCACACCGCTTGTACCAGGGGCTCCACTCCCATTTGGAATCGGCGGGAATTGACGGTGTCAAGGTTGATGTCATACACTTGCTTGAGATGCTATCCGAGGAATACGGTGGACGTGTGGAGCTTGCAAAAGCATACTACAAAGCACTCACTGCTTCGGTGAAGAAGCATTTCAAAGGCAATGGTGTCATTGCCAGCATGGAGCATTGTAATGACTTCTTCCTCCTGGGCACAGAAGCCATAGCCCTTGGCCGCGTAGGAGATGATTTTTGGTGCACTGATCCCTCTGGGGATCCAAACGGTACGTATTGGCTACAAGGGTGTCACATGGTGCACTGTGCCTACAACAGCTTGTGGATGGGGAATTTCATTCACCCGGATTGGGACATGTTCCAGTCCACTCACCCTTGTGCCGAGTTCCATGCGGCCTCTAGAGCCATCTCCGGTGGACCCATTTACGTTAGCGATTGCGTCGGAAAGCACAACTTCAAGTTGCTCAAAAGCCTCGTTTTGCCAGATGGGTCTATCTTGCGTTGTCAACATTATGCACTCCCCACAAGAGACTGCCTGCGAAACAAGAGTGCCTCTGAATTTTCACATGCTGTGACATGCTCAGCGAGTCCCAAAGATATTGAATGGTGCAATGGGAAACGCCCAGTGTGCATCAAAGGGGTGGATGTGTTTGCTGTATATCTGTTCAAGGAAGACAAGCTGAAGCTCATGAAGTGTTCCGACGAATTGGAAGTCTCACTCGAGCCGTTTAGTTTTGAGCTAATCACAGTGTCTCCGGTGGCACTGTTTTCAAAAAGGTTGATTCAATTTGCTCCAATTGGGTTAGTGAACATGCTTAACTCGGGTGGTGCCATTCAGTCCCTGGAGTTTGACGACCACGCAAGCCTGGCCAAAATTGGGGTGAAGGGTTGTGGGGAGATGAGGGTGTTCGCATCAGAGATACCTGTTAGTTGCAAAATTGATGGGGTGGGTGTGAAATTTGGTTACGAGGACAAAATGGTGAGGGTCCAAGTTCCCTGGCCTAGTTCTTCAAGATTGTCAGTGGTTGAGTTTTTGTTTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00276	18824	23662	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH36

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K06617	E2.4.1.82	EC:2.4.1.82	Galactose metabolism	map00052

Gene Ontology

molecular_function
GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000276s00017151.1	PF05691.7	Raffinose_syn	25	577	9.20E-277

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.457
SRR1783600	control	0.425
SRR1783602	moderate drought stress	0.767
SRR1811619	moderate drought stress	0.719

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.211
DRR006520	Root Summer glycyrrhizin high producing strain	2.257
DRR006521	Root Winter glycyrrhizin high producing strain	0.299
DRR006522	Root Winter glycyrrhizin high producing strain	0.293
DRR006523	Root Summer glycyrrhizin low producing strain	1.389
DRR006524	Root Summer glycyrrhizin low producing strain	1.372
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.041
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.072

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.677
SRR2868004	Drought Stress (root)	0.881
SRR2967015	Control (root)	0.709

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.451
SRR9715740	Leaf	0.499
SRR9715741	Leaf	0.208
SRR9715739	Root	1.187
SRR9715742	Root	3.175
SRR9715743	Root	2.448

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.517
SRR8400027	Control - Root	3.412