Gene detail information of Glyur000275s00017067 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G57350.1 | 4.00E-08 | Nucleoporin interacting component (Nup93/Nic96-like) family protein |
| NR | XP_007150722.1 | 3.82E-18 | hypothetical protein PHAVU_005G175500g [Phaseolus vulgaris] |
| Swissprot | tr|F4J284|NU93B_ARATH | 6.00E-09 | Nuclear pore complex protein NUP93B {ECO:0000303|PubMed:21189294} |
| trEMBL | tr|V7C1F1|V7C1F1_PHAVU | 1.00E-18 | Uncharacterized protein {ECO:0000313|EMBL:ESW22716.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00275 | 212354 | 214296 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.779 |
| SRR1783600 | control | 1.108 |
| SRR1783602 | moderate drought stress | 6.368 |
| SRR1811619 | moderate drought stress | 7.289 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.198 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.508 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.088 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.960 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.700 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.975 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.120 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.935 |
| SRR2868004 | Drought Stress (root) | 0.943 |
| SRR2967015 | Control (root) | 0.921 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.135 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.751 |
| SRR9715742 | Root | 0.478 |
| SRR9715743 | Root | 0.587 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.454 |
| SRR8749028 | MeJA induced 9h | 6.076 |
| SRR8749029 | MeJA induced 9h | 0.789 |
| SRR8749030 | Uninduced | 1.807 |
| SRR8749031 | Uninduced | 0.138 |
| SRR8749032 | Uninduced | 0.116 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.861 |
| SRR8400027 | Control - Root | 2.001 |