Gene detail

Gene detail information of Glyur000275s00017064

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G40850.1	3.00E-147	urophorphyrin methylase 1
NR	XP_004509171.1	0	PREDICTED: siroheme synthase 2-like isoform X1 [Cicer arietinum]
COG	YP_006282400.1	2.00E-79	Uroporphyrin-III C-methyltransferase [Pectobacterium sp. SCC3193]
Swissprot	tr\|O19889\|SUMT_CYACA	5.00E-54	Uroporphyrinogen-III C-methyltransferase
trEMBL	tr\|V7BWX5\|V7BWX5_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW21061.1}

Sequence

Transcript Sequence

>Glyur000275s00017064.1
CAAAAACACCAAAAGCACCAAAGTGGANTGTGTGTGTCCCTCCCAAAGCCCAAAGGCGAAGAACAACACTGCCTCCTCAATCTCCCCAAAGTCCAATTCAAACACCGCTTCTCTTCTCTAAACTCTCATATTATATATAAATTTAAAGCAGCCTTTTTTCTTCTTCAATCTCTGTCTTCGCTAACCAAGGAACAACCCCACATGGCTCTCATTCACAAGGTTGCGTCTTTCTCCTCTCTACCTTCACCTTTCAGTAGAAACCACCGTTTTCCGAATAACCACCGCCACCCCATTTCTTCCCTGAACTGCAGCAACAGCAACACTGTCTCAGCTTCACCCTTCACAGAGAAGCACTCCACAGAGAGGTACCAAAGGGANCAATGGGTGTACCAGAACACGATGGGGCAAACGATGTCGTGTTGTCCCCTCCCTTCTTCTGATTCAGGGGCTATAAGGGAGGATGACATAGCCATGCAGCTTCCGGAGCTGAAGAAGCTGCTGCAGGTGCTGAGGGAGAAGAGGGAGAGTGAAGGGAAGTGCAGTAGTGGAGGGAGGTGTGTGCCTGGGGATGTGTTTTTGGTTGGAACAGGACCTGGGGATCCTGAGTTGTTGACTCTCAAGGCTGTGAGAGTGATCAAGAGTGCTGATTTGTTGTTGTATGATAGGTTGGTGTCCAATGATGTGTTGGATTTGGTTTCCCCTAATGCTAAGCTTCTCTATGTGGGGAAAACTGCTGGATACCACAGCAGAACCCAGGAGGAAATACATNAGCTTCTTCTGAGTTTTGCAGAAGCTGGGGCGACTGTTGTGAGACTTAAAGGGGGTGATCCATTGGTGTTTGGGAGGGGTGGGGAGGAAATGGATTTTCTGCAACAGCAAGGTATCCACGTGAAAGTTATTCCAGGTATAACTGCAGCATCTGGAATAGCAGCAGAGCTGGGGATTCCATTAACTCACCGTGGTATTGCAAATAGTGTGAGATTCCTCACGGGGCATTCAAGGAAAGGAGGAACTGATCCTCTCTTTGTATCAGAAAACGCTGCCGATCCTGAGTCTACCTTGGTGGTTTACATGGGGTTGTCAACCTTCCCTTCACTTTCAGAGAAATTAATGCATCATGGTTTGTCCCCTCAGACCCCAGCTGCAGCCATTGAGCGAGGGACNACACCACAGCAGCGCACAGTGTTTGCAGAACTAAAGGACCTTCCTGAGAAAATTANGACGGCTGGGTTGGTGTCACCGACACTGATAATAATAGGCAAAGTTGTTGAGTTATCACCATTCTGGCCAATTTCTACAGAACAAGAATCATGTTTGATGCAGCAGGCATGATGGATGTTTTTGAGAAATATTACTGTGGAACTTGTGGAGATGAAGGATTGATTGATTACCTTTGCACAGAAAAANTGTTTAAGATCCATCTAATTTGGGAGTGGGAAATCAAGCGAGCTATCTGATTTTTTTGGGGAAATGAAGAACTTCTGCCCTTGTGTTTCTGGTATCTATTGGAGTGGTTGGCAAGGCATTGGGCAGAAGTGTTTCAGAACAAACTTTGATTCAACATGTTCCAGATTGGGAATAAAACAAAGTGATGCAAGGTTTTAGTCTCNTTTTTTTATAGAGAAACAGAATAATACAGGAGTTTCCGAGGCCACAGCTATCTGGATCGGATTACGTGTTCCATAGTCATTAGGTGAAATTTTTGGCCTTAAGCTATTTAGCNTCATTCTTTAATGGAGAAATATTGAGATAAGTTTCAAGATGTGATAACTTATGAAGCCAGATCAATAGTAGCTTCAACAATTTCATTTGTTCAATTTATCAATGTTGCTATNTAGAATTTGGATTCGTTCCTTCCGTTATAATTCATGTGAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00275	196849	201255	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006779 porphyrin-containing compound biosynthetic process

GO:0008152 metabolic process

GO:0055114 oxidation-reduction process

molecular_function

GO:0008168 methyltransferase activity

GO:0043115 precorrin-2 dehydrogenase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000275s00017064.1	PF00590.15	TP_methylase	124	336	2.50E-47

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.113
SRR1783600	control	2.182
SRR1783602	moderate drought stress	5.882
SRR1811619	moderate drought stress	5.656

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	13.051
DRR006520	Root Summer glycyrrhizin high producing strain	13.143
DRR006521	Root Winter glycyrrhizin high producing strain	10.755
DRR006522	Root Winter glycyrrhizin high producing strain	10.488
DRR006523	Root Summer glycyrrhizin low producing strain	6.904
DRR006524	Root Summer glycyrrhizin low producing strain	6.606
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.195
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.334

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	25.824
SRR2868004	Drought Stress (root)	13.264
SRR2967015	Control (root)	17.678

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	13.872
SRR9715740	Leaf	11.229
SRR9715741	Leaf	10.585
SRR9715739	Root	4.171
SRR9715742	Root	9.945
SRR9715743	Root	9.685

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	56.587
SRR8749028	MeJA induced 9h	65.808
SRR8749029	MeJA induced 9h	72.440
SRR8749030	Uninduced	46.831
SRR8749031	Uninduced	52.388
SRR8749032	Uninduced	75.823

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.005
SRR8400027	Control - Root	11.181