Gene detail

Gene detail information of Glyur000275s00017058

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G17020.1	3.00E-83	senescence-related gene 1
NR	KEH33162.1	0	2OG-Fe(II) oxygenase family oxidoreductase [Medicago truncatula]
COG	YP_005435847.1	1.00E-24	2OG-Fe(II) oxygenase family oxidoreductase [Rubrivivax gelatinosus IL144]
Swissprot	tr\|Q39224\|SRG1_ARATH	1.00E-100	Protein SRG1
trEMBL	tr\|A0A072UU33\|A0A072UU33_MEDTR	0	2OG-Fe(II) oxygenase family oxidoreductase {ECO:0000313\|EMBL:KEH33162.1}

Sequence

Transcript Sequence

>Glyur000275s00017058.1
GTTGGATATGGGCTGATCAATGGTGAGTTGGGAAGCCCACTAGCCCTATTGATATTTTAATTCTAAGATAAATTTGTTAATTGACCAAAAAAAAAAGATAAATTTGTTAATTTTTTTTTAATATGAATCATTTCATATATCCCAGTTGTGTATAAGATCCATAAAGTCAAACAACACAACAACACATATATATCTTACNATGCTGTCTCCCATGACATGACCGAAGAGAGTTTTGAAATGGATGCGAAAAGTGAGAGCCTGGAATCATCAATTCCAGTTCCAAGTGTTCAAGAGCTAGCACTCCAACGCCGACAAAGAGTGCCACCAAGGTACATAAGAGATGATGACACCTCCCCTTCTGATCCATCCCTTCGCGTCCCTTTAATAGACATGGCCAAGTTGTTCAACAAAGACACACAACAAGACCAGCTTCAAAAGCTTCACCTTGCATGCAAACACTGGGGTGTTTTCCAGATTGTAAACCATGGAGTTTCAAATGCATCCCTTAAGAATATGAGGAATCAAGTTCAAAGATTTTTTGAGCTCCCTTCTCAAGAGAAAAAACGATGGGCACAGAAACCAGGAAGTCTTGAAGGCTATGGTCAAGCATTTGTGACCTCTGAGGACCAAAAGCTGGATTGGAATGACNTGATCTTCCTCAAATCTCTCCCCATTCAGAACAGAAAATTGGATTTGTGGCCCCAAAACCCTCCTGGGTTCAGGGAAGCATTAGAGAGATATTCAGAAGATATGAAGGAGGCAGCAATTTCAATTGTGAATTTCATTACTTTGGCTTTGGGGCTTCAGGATACACAGATATCAGATAGTTTCCGAGAAGGACTATATGATATAAGGATGAATTACTACCCACCTTGTCCAGAGGCTNAAAGAGTTCTTGGCATTGTTCCTCATGCTGACAATTCAGGGATCACTCTCTTGGTTGACTTTGGTGACTTTCCAGGGTTGCAGTTCCTGAAAGATGGAAAATGGGTCGGTGTTGAACCTATAGAAGGGGCCATTGTTGCAAACATAGGCCAAATCATTGAGGTGATGACCAATGGGATATACAAAGCACCAGAGCACAGAGCTGTAGTAAATAAGATGAAGGAGAGATTGTCAGTAGTGACATTCTGTTATCCAAGCCCTTCTATGGACATTGGACCTGCTGACAAGCTGATTGGTGAAGGAAACCTTCCTGTATACAAGAACATGACTCATGCAGAGTACTTCAGCAGGTTTTTCAATAGAAAGCTTGATGAATCGTTTATTGATAGTCTGAGAATATGATCAATATGATCAAAATGATGTTATTTGTACATCATTTTCATTGTACTATTTTCCAATATTTCCCTTTCAAATAATA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00275	136608	139089	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0016491 oxidoreductase activity

GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000275s00017058.1	PF14226.1	DIOX_N	54	163	4.40E-27
Glyur000275s00017058.1	PF03171.15	2OG-FeII_Oxy	211	306	3.70E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	15.857
SRR1783600	control	15.899
SRR1783602	moderate drought stress	6.778
SRR1811619	moderate drought stress	6.804

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.912
DRR006520	Root Summer glycyrrhizin high producing strain	4.051
DRR006521	Root Winter glycyrrhizin high producing strain	0.900
DRR006522	Root Winter glycyrrhizin high producing strain	1.113
DRR006523	Root Summer glycyrrhizin low producing strain	1.134
DRR006524	Root Summer glycyrrhizin low producing strain	1.191
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.971
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.901

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.539
SRR2868004	Drought Stress (root)	4.332
SRR2967015	Control (root)	6.452

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.028
SRR9715740	Leaf	1.410
SRR9715741	Leaf	3.923
SRR9715739	Root	4.286
SRR9715742	Root	5.328
SRR9715743	Root	4.338

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.691
SRR8749028	MeJA induced 9h	1.110
SRR8749029	MeJA induced 9h	1.027
SRR8749030	Uninduced	0.459
SRR8749031	Uninduced	2.069
SRR8749032	Uninduced	2.410

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	16.447
SRR8400027	Control - Root	13.103