Gene detail information of Glyur000275s00017051 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G29575.4 | 1.00E-26 | ABI five binding protein 3 |
| NR | XP_004499859.1 | 1.12E-115 | PREDICTED: ninja-family protein AFP3-like [Cicer arietinum] |
| Swissprot | tr|Q94F39|AFP3_ARATH | 7.00E-31 | Ninja-family protein AFP3 |
| trEMBL | tr|G7IZB8|G7IZB8_MEDTR | 1.00E-109 | Ninja-family protein AFP1 {ECO:0000313|EMBL:AES69254.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00275 | 94212 | 95992 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000275s00017051.1 | PF07897.6 | DUF1675 | 128 | 231 | 1.50E-35 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.730 |
| SRR1783600 | control | 9.457 |
| SRR1783602 | moderate drought stress | 8.284 |
| SRR1811619 | moderate drought stress | 8.240 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.456 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.937 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.982 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.846 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.906 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.966 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.046 |
| SRR2868004 | Drought Stress (root) | 0.113 |
| SRR2967015 | Control (root) | 0.120 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.293 |
| SRR9715740 | Leaf | 1.485 |
| SRR9715741 | Leaf | 1.526 |
| SRR9715739 | Root | 7.707 |
| SRR9715742 | Root | 6.894 |
| SRR9715743 | Root | 6.074 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.309 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.063 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 14.498 |
| SRR8400027 | Control - Root | 16.270 |