Gene detail

Gene detail information of Glyur000275s00017047

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G61010.2	2.00E-146	exocyst subunit exo70 family protein E2
NR	XP_003522293.1	0	PREDICTED: exocyst complex component EXO70A1-like [Glycine max]
COG	NP_968295.1	3.00E-14	RNA-binding protein [Bdellovibrio bacteriovorus HD100]
Swissprot	tr\|Q9FGH9\|E70B1_ARATH	2.00E-87	Exocyst complex component EXO70B1
trEMBL	tr\|I1JWP0\|I1JWP0_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA04G32420.1}

Sequence

Transcript Sequence

>Glyur000275s00017047.1
ATGGAGGAACATAAATCTGTGATCACAACCTGTGAAGAAGATCAACACATGGTTGCTGCAGCTCAGCACATTTTCAAGGCACTAGCTGCAAGCAAGACAGTCTCTGATGACTTGAGAAAAACCCTCTTGAAATTTGAGACCCAGTTGTCCGCAATGTTCATAGTCAATGAAAGAAATATTGAGGGCATCAAGCAATTAGAGAGGAAGCTTAAATGTGCTGAAGACAAGGTAATGAGTTGGGAGGCAAATCATTCCATAACATGGGACTCTGATCCCAAGGACAGGGAGTGTTCTGAGTATTTAAAAGTTGTTGGTGAAATCCAAACTCTGACCCATAGTTTGCAAAACTTTTCTTCNGTGGATGAAAATTGGGAGCAGAAGGAACTTCTTCAAAGAACTAATGGAATCCTGCAGATTGCCATGTCAAGGCTTGAGGAAGAGTTGGTCCACATTCTTGTTCANCATAAGCAGTACTTTGAGCCTGAATACATGTCTTTCCATTCCAATAGAGTGGATATGGTGTATGATGAATCATTTGGTTCAGTTGAGGATGAACAAATCGACGAGGCATCCCGGAGTAGCGGCACTAGCCGATTCGAGCCCAGTGCTGTGGATTTGGTGCATCCTGCTGTACTTGAAGATCTCAGGAGCATTGCTAAAGTCATGTTTGGTTCAAAATACCATCAGGAGTTCTGCCAGGTCTTCATTACATCCAGGAGAGATGCCTTGGATGAGTACTTCATCATTCTTGAAATGGGGAAATTAAGTATTGAGAATGTGCTGAAAATGGAGTGGCATTGCTTGAACCGCGAGATAAAGAAATGGATCCGCGCCATGAAGATCATAATTCAGGTGTATCTTGTCAGCGAGAAGCGATTGTGCAAGCAGATTCTCGGAGACTTTGGATCTGTTTATCAGTTTTGCTTCTCTGAAATATCCCAGAGTTGTGTGCTGCGCCTCTTAAACTTTGGAGAGGCCATAGCAATGGGAACACACACACCGGAAAAACTGTTTCGCTTACTTGACATGTATGAGGTCTTGNAGCAACTTGCCGCGGATGTGGACATTTTGTTCTTTGAAGATGTTGGTTCTTTTGTTAGGGGAGAGTTTCACAAGCTTCTAAGTAGGTTTGGTGACACTGTGAGGTCAACATTTCTAGCATTTGGAAATGCTATTGCAACTAACCCCTCAAAAACCCCTTTCCCTGGNGGGGGTGTTCACCATCTTACAAAGTATGTCATGAATTACATCAAGGCACTTGCTGAATATGGTGGTACCCTTAATCTCCTTCTNGTTGTAGATGAAAGTTCAACTGATAAACATGACAATTCTGCTNGTGCTCCCTCATGTTGTCCAATGGCTTGCCACTTGAGGCTAATCACTGCCACTCTAGAGTCCAACTTGAGCAACAAGTCCAAGTTATACAAAGATGTGGCTTTGCAGCACATTTTCATGATGAACAACATTCATTACATGGTGCAAAAGGTTAAGTGCTCTTCTGACCTATGCCATTTCTTTGAAGATTACTGGCTTCNCCGGCATGTTGGGATGTTTCAACATCATGCTAGGAGTTATGAGAAGGTGACTTGGGGTTCAGTACTTTCATTGCTTAGGGAGGATAGTGTGTCAAATTGTGACTCAGAGAGAACTCTGAAGAGAAAGTGCAAAGAGTTTAGCACTGCTTTTGGTNAAGTATACAGGAACCAGACAGGGTGGTGTGTCCCGGATTTGGAACTCCGTGAAGATCTACAAATCTCAGTTTCTCAGAAGGTTGTTCTTGCTTACCGCGCATATACCGGAAGAAACTCATCTAACATTGCTGAGAAGTGGATCAAGTACACAGCAGATGATCTACAAAGTTATATTTTGGATCTTTTTCAAGGCTCACCAAAATCTTTGCACCATTCTCAGCACAAAAAGAATATGGCTTTCTTTGGTAGAGTTGGGAATATACTAAGGCATGCAGCAAATAGGAAGATCGGTTCAGAGTTGTGTTCATTGCCATCTGTTTTCCAAGCCACAAGATGCACTTGGAATTCTCCGAATTCAAAGCTGTTTATAGGAGGGGTTTCACATTCTATTGATGAGCAAAGTCTGAGGGAAGTATTTTCAAAATATGGCGAAGTTGTTGCTGCAAGGATAATTGTGGATCGTGAAACTGGTAGGTCCAAAGGATTTGGCTTTATTACTTACAGTACAGTTGAGGGGGCATCAAGTGCCATTCAGGCCTTGGATGGACAGGTAATGCAGATTGTTTCTCCTAGTATTAGAATTTCATTATTAGCAATGAACTGCAGAATGATCTCATACACATATACATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00275	79318	83080	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006887 exocytosis

cellular_component
GO:0000145 exocyst

molecular_function

GO:0000166 nucleotide binding

GO:0003676 nucleic acid binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000275s00017047.1	PF03081.10	Exo70	272	625	2.70E-96
Glyur000275s00017047.1	PF00076.17	RRM_1	685	748	4.20E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.524
SRR1783600	control	2.547
SRR1783602	moderate drought stress	1.776
SRR1811619	moderate drought stress	1.837

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.441
DRR006520	Root Summer glycyrrhizin high producing strain	5.372
DRR006521	Root Winter glycyrrhizin high producing strain	0.288
DRR006522	Root Winter glycyrrhizin high producing strain	0.280
DRR006523	Root Summer glycyrrhizin low producing strain	12.759
DRR006524	Root Summer glycyrrhizin low producing strain	12.321
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.280
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.305

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.249
SRR2868004	Drought Stress (root)	5.984
SRR2967015	Control (root)	8.798

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.701
SRR9715740	Leaf	1.811
SRR9715741	Leaf	1.375
SRR9715739	Root	7.289
SRR9715742	Root	5.295
SRR9715743	Root	6.485

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.727
SRR8749028	MeJA induced 9h	0.740
SRR8749029	MeJA induced 9h	0.155
SRR8749030	Uninduced	0.524
SRR8749031	Uninduced	0.033
SRR8749032	Uninduced	0.122

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.180
SRR8400027	Control - Root	9.330