Gene detail

Gene detail information of Glyur000275s00017045

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G18640.2	4.00E-112	3-phosphoserine phosphatase
NR	XP_004499855.1	0	PREDICTED: phosphoserine phosphatase, chloroplastic-like [Cicer arietinum]
COG	YP_004916320.1	1.00E-38	phosphoserine phosphatase [Methylomicrobium alcaliphilum 20Z]
Swissprot	tr\|O82796\|SERC_ARATH	3.00E-141	Phosphoserine phosphatase, chloroplastic (Precursor)
trEMBL	tr\|G7IZA6\|G7IZA6_MEDTR	0	Uncharacterized protein {ECO:0000313\|EMBL:AFK47305.1}

Sequence

Transcript Sequence

>Glyur000275s00017045.1
GAAAGGAAGATCCCCCATGTTTACATGACACATGTTTACATGACACTTGCTTAGTTCGGGAGACGTTGAGCTTGAGCCTCACCAACCACCATCTCTGATTCTCCTTCCGCAACCGCAAATCGCTTCTTCATTCCTTCCTTTGTTAACTTCACAGAGTAGTTTTTATGGAAGGGTTGGTGAGCTGTGGGATCATCCCAGTTCGTGTTTTTGGCGTTACGAAGCAGCGATCTCGTTTTCTCTCTGCATCGGCGCTGCATCTGAGAAAGGGAGCGCGTGAATTTCGAATTGGGATGGTGAAGAAGCAGTGTTCGCCGTTCTCTGTGGCTGCTGCTGCTGCTGCTTCTGTTGGGGNCTCCCAAGTGGGCCATTTCGAGAACACGCTTCCTTCGAAAGAAATTTTGGAGCTTTGGAAGAATGGTGATGCCGTGTGCTTTGATGTCGATAGCACTGTGTGCCTGGATGAAGGTATTGATGAGCTTGCTGAATTCTGTGGGGCTGGAAAGGCTGTTGCAGAATGGACTGCTAGAGCAATGGGTGGTTCTGTTCCTTTTGAGGAAGCCTTGGCTGCTAGATTATCTTTGTTCAATCCCTCTTTGTCTCAACTTCAGAATTTTCTTGAGCAAAGGCCCCCAAGGCTTTCCCCTGGCATTGAAGAGTTAGTCCAGAAGCTAAAGGCTAACCACAAGCATGTTTTTCTGATCTCAGGGGGCTTCCGTCAAATGATCAATCCTGTTGCATCAATACTTGGGATTCCACAAGAGAATATTTTTGCCAATCAACTACTTTTTGGAAGCTCTGGAGAGTTTCTGGGATTTGATGAAAATGAGCCTACTTCGAGGAGTGGAGGAAAAGCTACTGCAGTCCAACAAATCAAGAAGGATCATGGATTCAAAGCATTAACTATGGTGGGGGATGGTGCAACTGACTTCGAGGCTCGTAGACCAGGTGGTGCCGATTTGTTCATTTGCTATGCTGGTGTTCAACTGCGAGAGGCCGTTGCTGTAAAAGCTGATTGGCTAGTTTTCAATTTTGAAGACCTCATAAATTCGTTGGGGTAACATTATTTTTTTCTTCTTTTACATTTGTTTCTTTTCGAGGGCGCAAGGTAAGTGTCCTATTTTTGAAGTTACCCCTTCTATAATTTCAAGAGAATCATATAAGTGTGAGAAAACGAACATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00275	61773	65030	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01079	serB, PSPH	EC:3.1.3.3	Carbon metabolism	map01200
			Biosynthesis of amino acids	map01230
			Methane metabolism	map00680
			Glycine, serine and threonine metabolism	map00260

Gene Ontology

biological_process

GO:0006564 L-serine biosynthetic process

GO:0008152 metabolic process

molecular_function

GO:0004647 phosphoserine phosphatase activity

GO:0016791 phosphatase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000275s00017045.1	PF12710.2	HAD	88	257	5.40E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	14.852
SRR1783600	control	15.029
SRR1783602	moderate drought stress	13.262
SRR1811619	moderate drought stress	13.269

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	26.683
DRR006520	Root Summer glycyrrhizin high producing strain	26.271
DRR006521	Root Winter glycyrrhizin high producing strain	15.007
DRR006522	Root Winter glycyrrhizin high producing strain	14.973
DRR006523	Root Summer glycyrrhizin low producing strain	14.761
DRR006524	Root Summer glycyrrhizin low producing strain	15.014
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.413
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.521

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	46.650
SRR2868004	Drought Stress (root)	38.636
SRR2967015	Control (root)	35.366

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	19.224
SRR9715740	Leaf	23.791
SRR9715741	Leaf	23.542
SRR9715739	Root	18.142
SRR9715742	Root	20.043
SRR9715743	Root	18.226

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	24.009
SRR8749028	MeJA induced 9h	19.649
SRR8749029	MeJA induced 9h	14.280
SRR8749030	Uninduced	15.701
SRR8749031	Uninduced	4.533
SRR8749032	Uninduced	7.215

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	46.807
SRR8400027	Control - Root	51.852