Gene detail

Gene detail information of Glyur000274s00012560

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G28160.1	1.00E-69	FER-like regulator of iron uptake
NR	ACN21642.1	6.12E-154	putative basic helix-loop-helix protein BHLH20 [Lotus japonicus]
Swissprot	tr\|Q0V7X4\|FIT_ARATH	3.00E-98	Transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR
trEMBL	tr\|C0JP23\|C0JP23_LOTJA	2.00E-154	Putative basic helix-loop-helix protein BHLH20 {ECO:0000313\|EMBL:ACN21642.1}

Sequence

Transcript Sequence

>Glyur000274s00012560.1
ATGGATCCTTATGCAGAGACTCTGGTGCACATTAATGATTTTGAGCCTCACGACTTCAACGAAGATCCCAACTTTGATCAGTTCATCNATTTGATTCCTGGGGAGAATGAAGATGCTATCTGCAACATCAATTCTGGCCTTATCAATGAATGCTTTGTTGATAACCCATTCCTCCATTCATGCCCTGCAAACCCATTTGATCAGAGCAATAGTAATTCTGTCATGAAAGTTTATGGTCCAAGCTCTTCATCATTTAGCTCCTTCTCTTGTTTTGATGGGGAAGAAGAAGCCAAGGAGAGAGGAGAAGAAGAAGAAGAAGAAAATGAGGGGGATAATTCTTCTGCAACAACAACCACCAGCACCACACCAACTGCAAGTGTTAAAACTAAGCAAAGGCCAAAAACTGATAGGTCCAAGACTTTGATCTCTGAGCGCAGGAGGAGAGGCCGAATGAAGGAGAAGCTTTACGCATTGCGTTCTTTGGTTCCCAACATAACTAAGATGGATAAGGCCTCTATCATTGGAGATGCTGTTTCATATTTGTGTGAGATTCAATCACAAGCCAAGAGGCTAAAAACTGAGGTTGCAGGACTTGAAGCATCCTTTTCCTTATTAGTATCCGAAAATTATCAAGGATCAATTGATAACCCCATAAAGGTTCAATTCACCCACAACAGACGTTCAATATGCAAGAAGATCGTCCAGATGGACGTGTTTCAAGTGGATGAAAGAGGGTTTTATGGGAAAATAGTGTGCAATAAGGGTGAAGGTGTGGCTGCCTCNTTGTACAGGTCTCTTGAATCTCTGAGGGGCTTCAATGTTCAGAATTCAAACTTGGCCACTGTTTCTGACAGTTTTCTACTTACATTTTCATTGAACGCGAAAGGCTCTGAGCCAGAAATTAACCTGCCCAATTTGAAGCTATGGGTGGCTGGCGCTTTTCTGAATCAAGGCTTTGAATTCATGCCTTCTTTTCACGCTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00274	210764	212040	-

Gene family

Gene family	subfamily
Transcription Factors Family	bHLH

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0046983 protein dimerization activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000274s00012560.1	PF00010.21	HLH	142	185	1.10E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.251
SRR1783600	control	0.278
SRR1783602	moderate drought stress	0.096
SRR1811619	moderate drought stress	0.019

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	30.009
SRR2868004	Drought Stress (root)	19.616
SRR2967015	Control (root)	6.968

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.000
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.000
SRR9715739	Root	0.050
SRR9715742	Root	0.000
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.180
SRR8749028	MeJA induced 9h	5.663
SRR8749029	MeJA induced 9h	6.154
SRR8749030	Uninduced	1.970
SRR8749031	Uninduced	2.341
SRR8749032	Uninduced	1.098

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.480
SRR8400027	Control - Root	2.647