Gene detail information of Glyur000274s00012556.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G28200.1 | 3.00E-37 | C2H2-type zinc finger family protein |
| NR | XP_007132339.1 | 5.02E-93 | hypothetical protein PHAVU_011G086400g [Phaseolus vulgaris] |
| Swissprot | tr|Q681X4|ZAT5_ARATH | 2.00E-55 | Zinc finger protein ZAT5 |
| trEMBL | tr|V7AHJ5|V7AHJ5_PHAVU | 2.00E-93 | Uncharacterized protein {ECO:0000313|EMBL:ESW04333.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00274 | 185092 | 185994 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2H2 |
| EAR motif-containing Proteins | C2H2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000274s00012556.1 | PF13912.1 | zf-C2H2_6 | 130 | 155 | 2.50E-10 |
| Glyur000274s00012556.1 | PF13912.1 | zf-C2H2_6 | 215 | 240 | 4.60E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.508 |
| SRR1783600 | control | 2.408 |
| SRR1783602 | moderate drought stress | 1.879 |
| SRR1811619 | moderate drought stress | 1.980 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.950 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.144 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.710 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.678 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.178 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.790 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.452 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.804 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 12.792 |
| SRR2868004 | Drought Stress (root) | 14.955 |
| SRR2967015 | Control (root) | 12.385 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.726 |
| SRR9715740 | Leaf | 9.135 |
| SRR9715741 | Leaf | 5.413 |
| SRR9715739 | Root | 3.472 |
| SRR9715742 | Root | 4.126 |
| SRR9715743 | Root | 4.260 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.420 |
| SRR8749028 | MeJA induced 9h | 0.662 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 2.460 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.032 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.582 |
| SRR8400027 | Control - Root | 7.231 |