Gene detail information of Glyur000274s00012555


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G44890.12.00E-30ribosomal protein L9
NRKHN21080.12.84E-6350S ribosomal protein L9, chloroplastic [Glycine soja]
COGYP_003888209.15.00E-2150S ribosomal protein L9 [Cyanothece sp. PCC 7822]
Swissprottr|Q8L803|RK9_WHEAT2.00E-5350S ribosomal protein L9, chloroplastic (Precursor)
trEMBLtr|I1LR95|I1LR95_SOYBN1.00E-63Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G08670.1}

Sequence

Transcript Sequence
Protein Sequence


Location information (JBrowse)

ScaffoldStartEndStrand
Scaffold00274177434180332+


Gene family

Gene familysubfamily
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KEGG pathway

KOEnzymeEnzyme IDpathwaymapID
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Gene Ontology

biological_process

GO:0006412  translation


cellular_component

GO:0005622  intracellular

GO:0005840  ribosome


molecular_function

GO:0003735  structural constituent of ribosome

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000274s00012555.1PF03948.9Ribosomal_L9_C161012.50E-23
Glyur000274s00012555.2PF03948.9Ribosomal_L9_C17712.20E-15


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control11.624
SRR1783600control10.548
SRR1783602moderate drought stress7.860
SRR1811619moderate drought stress7.558

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain25.583
DRR006520Root Summer glycyrrhizin high producing strain26.951
DRR006521Root Winter glycyrrhizin high producing strain17.120
DRR006522Root Winter glycyrrhizin high producing strain16.698
DRR006523Root Summer glycyrrhizin low producing strain29.138
DRR006524Root Summer glycyrrhizin low producing strain27.108
DRR006525Leaf Summer glycyrrhizin high producing strain148.846
DRR006526Leaf Summer glycyrrhizin high producing strain148.379

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress (root)15.768
SRR2868004Drought Stress (root)14.474
SRR2967015Control (root)14.634

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leaf97.543
SRR9715740Leaf146.812
SRR9715741Leaf69.277
SRR9715739Root2.964
SRR9715742Root9.225
SRR9715743Root8.292

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h34.050
SRR8749028MeJA induced 9h19.028
SRR8749029MeJA induced 9h24.452
SRR8749030Uninduced9.703
SRR8749031Uninduced6.275
SRR8749032Uninduced10.574

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment - Root35.184
SRR8400027Control - Root35.251

© 2021 Resource Institute for Chinese & Ethnic Materia Medica, Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved