Gene detail

Gene detail information of Glyur000274s00012554

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G44880.1	0	Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain
NR	XP_004506081.1	0	PREDICTED: pheophorbide a oxygenase, chloroplastic-like [Cicer arietinum]
COG	YP_007108600.1	1.00E-95	Pheophorbide a oxygenase [Geitlerinema sp. PCC 7407]
Swissprot	tr\|Q9FYC2\|PAO_ARATH	0	Pheophorbide a oxygenase, chloroplastic (Precursor)
trEMBL	tr\|Q0H950\|Q0H950_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA12G08740.1}

Sequence

Transcript Sequence

>Glyur000274s00012554.1
ATTTTTTGTTCAAAAAGAAAAATTCCTAAAAGAAATCCTCTCATAAGCCATATATTTTGTCGACTCTGATCTGTAGCGATTGCCCATTGCAACACAGTCGCGAATGTGTGTGGTCTACATGAAAAATGTATTATGGCTGGACTAGTATTTTCACNTTCCCATACTAGTCAGTAGTCTCTCCCCTGTTTCCCTGTTAACTGCAGCAAAGCAATTTTACTATAGGTTAGATTTGATATCATTATTACCTAATTACCNAAAGCGCCTGTATATGTTCAAGCACTCAACTCGATTTGGAAAGTTTGTGCAAGAAGCACTTGTTGGAGCCACGCTACAAAGGAGAACCAAATTCGAACATGACATGTTTCAAGATACAAGGGCGTCAACCACAATCGGTGCATTTCACATGACACATAAGACATANCCACCCATAGTTTCGTCGTTCCCACTGTTTTTCCTCCAAAATGACTATCTAGAACTNGAAAGTGTCCACGTCGTAGATACTTGTGGCCCTGCCCCACAGCCACTGGGCCACAAGTCCTAAACGTATCTGTGCTACTTGGCAGCAGCGGGATCAACCTTTGAATACTCTTNAAAGTTGTGGACGTCCATCGTTCCTCCAGACTAATCTTTCATTTTTATTTTTCCCGAGAAAAAACAAAAAGAAATTTGTCACCGATCATAAAGCATTGCAGCNAACTTTGACAATAATAATTTCACGAATTGTTGAAACTTGCACGACTCGAACAATGGTGTTTTATTCTCTTCTATTGCATTTCATTTGAACCTCTATATAAAGTTCTTCCACCGTTAACAGTTCAGATCTCCAAAAAAAGTAAATTTAAAAAAAAAAACACCATTGATGGCTCTGCCACACACTATCTCTGCCTTAGTAGCAACCACGGTTACACTTTCATCACCAAGAAGCAAACCCCAGAAACCCCTTCCGGTTTCGTCCTTCACAAAGGCACCATTTTTGACGAAACAAACAATACCCAGAAGCAGAAGAAGCCTTTCCCTAACCCCTCTTGGCGTTGCGGCGCCACCCACAACAATTGAACCCGACCAATCGTTCCCAGAAGAGGAAAGTGCCGAAATTGAGGACGAATTTGGCGATGAGAGCTCGTCGTCCAAGTTTTCTTGGAGGGATCACTGGTACCCAGTTTCGTTAATCGAAGATCTGAACCCTAGCTTACCAACACCGTTTCAGCTTCTGGGTCGTGACATCGTGCTCTGGTACGACAATTCCAATTCCCAATGGGTTGCTTTCGATGATAAATGCCCCCATCGTCTTGCCCCTTTATCTGAAGGGAGGATCGATGAGGGTGGAAACTTGCAGTGTTCTTATCATGGGTGGTCTTTTGATGGGTGTGGATCCTGTGTTGTGATCCCTCAGGCTTCACCTGAAGGTCCAGAAGCACGTGCTGTTCGNTCTCCTAGAGCATGTGCCACTCGGTTCCCTACCATGGTGTCTCAGGGCTTGCTCTTTGTTTGGCCTGATGAGAATGGTTGGGAGAAAGCAAATGCCTCCAAGCCTCCATTGTTGCCTGATGACTTTGAAAAATCAGAGTTCGCCACGGTGAACATTCAGCGTGATCTGTTCTATGGCTATGATACTCTCATGGAGAATGTCTCTGACCCTTCTCACATTGATTTTGCTCATCACAAGGTTACAGGAAGGAGAGACAGAGCCAAGCCTCTGCCATTCAAGATGGATTCTCGTGGTCCNTGGGGCTTTGCAGGAGCTAATGAAGGGAACCCACGGATTAGTGCCAAATTTGTTGCACCATGTTATTATATGAACAAGATTGAGATTGATACCAAACTCCCAATAGTTGGTGACCAGAAATGGGTGATATGGATATGTTCCTTCAATGTCCCCATGGCACCCGGTAAGACTCGCTCCATTGTTTGCAGCGCTCGAAACTTCTTCCAGCTCACTGTGCCAGGACCTGCCTGGTGGCAAGTGGTTCCTAGGTGGTATGAACATTGGACTTCAAACAAGGTATATGACGGAGACATGATTGTCCTTCAAGGTCAAGAGAAAATCTTTCTATCAGAAACCAGGGAAGGCGGTGACATCAACAAACAGTATACAAATATCACCTTCACACCAACACAGGCNGATCGCTTTGTGTTGGCGTTTCGTAATTGGCTTAGGCGACACGGCAACGGCCAACCGGAATGGTTTGGCAATAGCGACCAGCCATTGCCATCAACTGTTCTATCAAAACGTGAGATGTTGGATAGATTTGAACAGCACACACTAAAGTGTTCATCATGTAAAGGAGCTTATGAGGGATTCCAAAGGTGGCAGAAAATCNTGATTGGTGCAACGGTTGTGTTCTGTGCAACGTCAGGGATCCCATCAGATACACAGCTGCGGATACTTTTGGCTGGACTCGCACTTGTCAGCGCAGCCTTAGCTTTTGCCTTAAACCAACTACAGAAGAATTTTGTATTCGTCGATTACGTGCACGCTGAAATCGAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00274	170028	176178	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K13071	PAO, ACD1	EC:1.14.15.17	Porphyrin and chlorophyll metabolism	map00860

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0010277 chlorophyllide a oxygenase [overall] activity

GO:0016491 oxidoreductase activity

GO:0051537 2 iron, 2 sulfur cluster binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000274s00012554.1	PF00355.21	Rieske	97	180	2.20E-18
Glyur000274s00012554.1	PF08417.7	PaO	306	400	1.60E-27

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	14.541
SRR1783600	control	14.492
SRR1783602	moderate drought stress	19.147
SRR1811619	moderate drought stress	19.161

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	23.781
DRR006520	Root Summer glycyrrhizin high producing strain	23.770
DRR006521	Root Winter glycyrrhizin high producing strain	189.993
DRR006522	Root Winter glycyrrhizin high producing strain	184.940
DRR006523	Root Summer glycyrrhizin low producing strain	34.001
DRR006524	Root Summer glycyrrhizin low producing strain	33.665
DRR006525	Leaf Summer glycyrrhizin high producing strain	45.386
DRR006526	Leaf Summer glycyrrhizin high producing strain	45.706

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.270
SRR2868004	Drought Stress (root)	6.487
SRR2967015	Control (root)	6.693

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	35.406
SRR9715740	Leaf	40.513
SRR9715741	Leaf	47.229
SRR9715739	Root	3.826
SRR9715742	Root	6.816
SRR9715743	Root	5.964

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	15.694
SRR8749028	MeJA induced 9h	29.507
SRR8749029	MeJA induced 9h	34.816
SRR8749030	Uninduced	8.316
SRR8749031	Uninduced	11.362
SRR8749032	Uninduced	25.681

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.585
SRR8400027	Control - Root	11.341