Gene detail information of Glyur000274s00012552 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G27970.1 | 1.00E-37 | CDK-subunit 2 |
| NR | NP_001237104.1 | 7.94E-58 | cyclin-dependent kinases regulatory subunit [Glycine max] |
| Swissprot | tr|Q6PS57|CKS1_ORYSJ | 2.00E-54 | Cyclin-dependent kinases regulatory subunit 1 |
| trEMBL | tr|V7AFM1|V7AFM1_PHAVU | 3.00E-58 | Cyclin-dependent kinases regulatory subunit {ECO:0000256|RuleBase:RU311113} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00274 | 165383 | 167144 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000274s00012552.1 | PF01111.14 | CKS | 3 | 72 | 1.80E-38 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 54.154 |
| SRR1783600 | control | 54.460 |
| SRR1783602 | moderate drought stress | 64.840 |
| SRR1811619 | moderate drought stress | 63.634 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 171.945 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 169.990 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 141.523 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 138.172 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 192.314 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 194.115 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 29.490 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 29.314 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 173.504 |
| SRR2868004 | Drought Stress (root) | 151.124 |
| SRR2967015 | Control (root) | 157.715 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 60.354 |
| SRR9715740 | Leaf | 81.293 |
| SRR9715741 | Leaf | 84.683 |
| SRR9715739 | Root | 198.016 |
| SRR9715742 | Root | 150.225 |
| SRR9715743 | Root | 156.291 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 163.849 |
| SRR8749028 | MeJA induced 9h | 49.529 |
| SRR8749029 | MeJA induced 9h | 83.238 |
| SRR8749030 | Uninduced | 26.631 |
| SRR8749031 | Uninduced | 14.787 |
| SRR8749032 | Uninduced | 62.352 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 163.835 |
| SRR8400027 | Control - Root | 155.155 |