Gene detail information of Glyur000274s00012546.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G27940.1 | 9.00E-19 | RING/U-box superfamily protein |
| NR | XP_004506089.1 | 4.00E-64 | PREDICTED: RING-H2 finger protein ATL57-like [Cicer arietinum] |
| Swissprot | tr|Q9SJJ7|ATL57_ARATH | 6.00E-25 | RING-H2 finger protein ATL57 |
| trEMBL | tr|A0A072ULK8|A0A072ULK8_MEDTR | 6.00E-57 | Zinc finger, C3HC4 type (RING finger) protein {ECO:0000313|EMBL:KEH29943.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00274 | 140526 | 141089 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000274s00012546.1 | PF13639.1 | zf-RING_2 | 122 | 165 | 2.30E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.611 |
| SRR1783600 | control | 2.195 |
| SRR1783602 | moderate drought stress | 2.973 |
| SRR1811619 | moderate drought stress | 3.288 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.526 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.767 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.161 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.494 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.995 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.350 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.531 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.522 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.253 |
| SRR2868004 | Drought Stress (root) | 3.206 |
| SRR2967015 | Control (root) | 2.603 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.158 |
| SRR9715740 | Leaf | 2.481 |
| SRR9715741 | Leaf | 1.580 |
| SRR9715739 | Root | 2.001 |
| SRR9715742 | Root | 2.769 |
| SRR9715743 | Root | 2.652 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.229 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.082 |
| SRR8749030 | Uninduced | 0.092 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.174 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.361 |
| SRR8400027 | Control - Root | 2.263 |