Gene detail

Gene detail information of Glyur000273s00014669

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G28550.3	3.00E-94	related to AP2.7
NR	XP_003542008.1	0	PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X1 [Glycine max]
Swissprot	tr\|Q9SK03\|RAP27_ARATH	5.00E-107	Ethylene-responsive transcription factor RAP2-7
trEMBL	tr\|I1M4P4\|I1M4P4_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G40470.1}

Sequence

Transcript Sequence

>Glyur000273s00014669.1
AGATTAAGCACCATGTTAGATCTTAATCTGAATGCCGATTCGACTCAGAACGATGACTCGCTTGTGCTGTTGGATAAGCTTCCCGAAGCTTCTTCGGGAACCTCGAATTCCTCCATCGTGAATGCGGAGGGGTCAAGCAACGGAGGAGGCGACGAGGANTCGTGCTCCACACGCGCCGGCTCAGTCTTCACCTTCAATTTCGGCATCCTCAAGGTGGAAGGAGGAGGGAACGACGTCGTGGCGGCGGCGGCGGCGACGAAGGAGCTGTTCCCGGTTAGTTCCGGGAATTGGCAGGGGCAGCCTTCGGCGTCGCCGTTTCTGGCGACGAGGAAGAGCGTGGTGGATCTCTCGCTGGATCATCATCATCGAGGTGAAAACGACGAAGTGAAGTTGATTCAGGTTCAGCAACAGCAACAGCCTCAGGTGAAGAAGAGTAGGAGGGGTCCAAGGTCTCGGAGCTCTCAGTACAGAGGAGTCACCTTCTACAGAAGGACCGGAAGATGGGAATCGCATATCTGGGATTGCGGGAAACAAGTCTATTTGGGTGGATTTGACACCGCTCATGCCGCTGCTAGAGCCTATGATCGAGCTGCGATCAAGTTCAGGGGGCTTGATGCTGACATCAATTTCAGTCTCGTTGATTATGAGGAGGATCTTAAACAGCAGATGAAGAATCTTTCCAAGGAGGAATTTGTGCACATACTACGTCGCCACAGTACCGGTTTCTCAAGGGGGAGCTCAAAATACCGAGGAGTGACACTTCACAAGTGTGGCCGTTGGGAAGCTCGAATGGGACAATTCCTTGGCAAAAAGTATATATATCTTGGGCTATTCGACAGCGAAGTAGAAGCTGCAAGGGCTTATGACAAGGCAGCTATCAAGTGCAATGGAAGAGAGGCAGTGACTAACTTTGAGCCAAGTACATATGAAGGCGAGATGAAACCTGAAGATATTAGTGAAGGTGGCAGTCACAATCTTGACCTGAATTTGGGCATAGCGACCCCAGGACATGGTCCCAAAGAAAACAGGGGGCATCATCAGTTCCAGACCGTCCCTTACAGCCTACCTTCTGGAAGTTCAAAGATGGAGACCAGTGCTAATTCAGTTATTGGTGATCCTTCTTTGAAAAGGATGGTTGTAACTGAAGAGCGTCCTTCTGTTTGGAATGCCACGTATTCCAGTTTCTTTCCCAATGAGGAAAGAGCAGAGAGAATCGGCATTGATCCTTCAAAAGGACACCCCAACTGGGCGTGGCAACCGCATGGACAGGTCAGTGCTTCNCCAGTACCACCGTTCTCTACTGCAGCATCATCAGGATTCTCAATTTCAGCTACCTTTCCATCGAGTGCCATCTTTCAAGCAAAATCCATGAACTCAGTTCCCCAGACACTCTGTTTCACTTCATCCACCCCACCTGGTAGCAATGCATCTCAATACTATTACCAGGTGAAGTCCTCGCAGGCACCGCCCTGAGCCTATTTTGTGATACAGATATGAATGGCAAATCTCAACAAGCATTTGCGTTAAAACTCAATTGTATAATTCAGTTAGGAATTGACGTATACTGAGATATGAAATTTGATTGCACCTCATGGTTAAACCATTATGCACATGTATGAAGGAAAAAGCTATTTTTTTAGTGCCTTAGTTCTCCAACGATTCTTGGTGTGTTTGGAAATCCGTTGCACGTTTGAGACAATCTATCACTCTTGATTTCCAAACATGCGCTCTGGTTTCTTAAAAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00273	176927	180485	+

Gene family

Gene family	subfamily
Transcription Factors Family	AP2
EAR motif-containing Proteins	AP2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function

GO:0003677 DNA binding

GO:0003700 transcription factor activity, sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000273s00014669.1	PF00847.15	AP2	154	203	1.10E-14
Glyur000273s00014669.1	PF00847.15	AP2	247	297	1.30E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.556
SRR1783600	control	13.510
SRR1783602	moderate drought stress	8.302
SRR1811619	moderate drought stress	8.397

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	20.244
DRR006520	Root Summer glycyrrhizin high producing strain	19.568
DRR006521	Root Winter glycyrrhizin high producing strain	35.304
DRR006522	Root Winter glycyrrhizin high producing strain	35.156
DRR006523	Root Summer glycyrrhizin low producing strain	9.519
DRR006524	Root Summer glycyrrhizin low producing strain	9.948
DRR006525	Leaf Summer glycyrrhizin high producing strain	15.290
DRR006526	Leaf Summer glycyrrhizin high producing strain	15.523

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	53.566
SRR2868004	Drought Stress (root)	76.555
SRR2967015	Control (root)	71.828

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	37.300
SRR9715740	Leaf	21.388
SRR9715741	Leaf	28.662
SRR9715739	Root	6.838
SRR9715742	Root	18.156
SRR9715743	Root	16.092

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.769
SRR8749028	MeJA induced 9h	16.711
SRR8749029	MeJA induced 9h	13.184
SRR8749030	Uninduced	23.954
SRR8749031	Uninduced	29.983
SRR8749032	Uninduced	33.041

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	106.216
SRR8400027	Control - Root	133.066