Gene detail

Gene detail information of Glyur000273s00014666

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G28560.1	9.00E-149	DNA repair (Rad51) family protein
NR	XP_004487150.1	0	PREDICTED: DNA repair protein RAD51 homolog 2-like isoform X1 [Cicer arietinum]
COG	YP_448501.1	2.00E-24	DNA repair and recombination protein RadA [Methanosphaera stadtmanae DSM 3091]
Swissprot	tr\|Q9SK02\|RA51B_ARATH	0	DNA repair protein RAD51 homolog 2
trEMBL	tr\|G7IU37\|G7IU37_MEDTR	0	DNA repair RAD51-like protein {ECO:0000313\|EMBL:AES67387.2}

Sequence

Transcript Sequence

>Glyur000273s00014666.1
ATGGCGAACAAGCTCATCAACCAGATGGGATTGCCCAAATCCATCGCCAATATCTTCACTGCTCGTAACATTATCACCGCCAAGGATGCATTGTCTCTTACTGAATTTGAGTTGATGGAATTGTTGGACGTTGGGATGGCAGAAGTAACATCTGCAATGGCACATATTAGCGAAGTNGCGTTACTTCTGATGGAGCAGCGGGTACGCAANGAGAGCTTGGCTGGTCATCTTCCCACTCGTTTGAAAGGGTTGGATGAAGCCTTGTGCGGTGGTATACCATTCGGTGTTTTGACAGAGTTGGTTGGTCCAGCAGGAATTGGCAAAACACAGTTTTGCTTGAAGCTCTCATTGCTGGCTTCATTGCCGTCAAATTGTGGAGGCTTAGATGGCCGTGTGATATATATTGATGTTGAATCCAAATTTAGCTCAAGAAGATTGATAGAGATTGGAATGACGAGTTTTCCTGAAATATTTCACAAGAAGGGAATGGCACAGGAGATGGCTGGTAGAATCCTGATTTTACGTCCTACATCACTTTCTGAATTTGCTGAGAGTTTGCAGCGGATCAAAGTATCACTTGTCCAGCAACAAGTCAAGTTGCTCATCATTGATAGCATGGCTGCTCTAGTTTCAGGTGAATATGATTGTGGGGCTTCTAGACAACAAACATTGGGTTGGCATGTTTCTTTCCTCAAGTCACTTGCTGAATTTTCACGAGTTCCGATTGTATTGACAAATCAAGTAAGATCCCAAATTGGTGATGAATCTCTCATGTATTCATTTCAAGCACAAAGCCGCTCTATAAGAGAAGACTATCGTGCTACATATGATTCTTCTCATCTTGTTGCTGCTTTGGGAATTAACTGGGCTCATGCTGTGACCATCCGTCTTGTACTTGAAGCCAAATCAGGTCAAAGGTATATAAAGTTAGCAAAATCTCCCATATCACCCCCTCTGGCTTTCCCTTATAACATAACTTCATCTGGGATTGTTCTGCTGGATGATGATGGGTTAGAGATGAAAGGGCCAGAAATAAACACTATTCACTGCCAAGGTTTGTCATTGAGCTTTTTTGCTGTTAGGTCTGCTGAATGCATTTTAAGCAAGTACAAAAAATATTTGGAAAGCTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00273	150627	154208	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0000724 double-strand break repair via homologous recombination

GO:0006281 DNA repair

cellular_component
GO:0033063 Rad51B-Rad51C-Rad51D-XRCC2 complex

molecular_function

GO:0003677 DNA binding

GO:0005524 ATP binding

GO:0008094 DNA-dependent ATPase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000273s00014666.1	PF08423.6	Rad51	77	331	1.30E-29

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.329
SRR1783600	control	1.297
SRR1783602	moderate drought stress	1.318
SRR1811619	moderate drought stress	1.348

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.835
DRR006520	Root Summer glycyrrhizin high producing strain	0.832
DRR006521	Root Winter glycyrrhizin high producing strain	2.020
DRR006522	Root Winter glycyrrhizin high producing strain	2.073
DRR006523	Root Summer glycyrrhizin low producing strain	0.600
DRR006524	Root Summer glycyrrhizin low producing strain	0.538
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.842
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.801

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.167
SRR2868004	Drought Stress (root)	6.711
SRR2967015	Control (root)	5.508

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.154
SRR9715740	Leaf	4.129
SRR9715741	Leaf	3.229
SRR9715739	Root	0.018
SRR9715742	Root	0.808
SRR9715743	Root	1.203

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.490
SRR8749028	MeJA induced 9h	5.005
SRR8749029	MeJA induced 9h	2.576
SRR8749030	Uninduced	1.926
SRR8749031	Uninduced	2.083
SRR8749032	Uninduced	1.500

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.997
SRR8400027	Control - Root	6.759