Gene detail

Gene detail information of Glyur000273s00014661.2

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G45780.2	0	phototropin 1
NR	AAB41023.2	0	phototropin-like protein PsPK4 [Pisum sativum]
COG	YP_771353.1	1.00E-30	hypothetical protein pRL110320 [Rhizobium leguminosarum bv. viciae 3841]
Swissprot	tr\|O48963\|PHOT1_ARATH	0	Phototropin-1
trEMBL	tr\|P93489\|P93489_PEA	0	Phototropin-like protein PsPK4 {ECO:0000313\|EMBL:AAB41023.2}

Sequence

Transcript Sequence

>Glyur000273s00014661.2
ATGATTCAGGACTTGGGAGGAGTGAAGAGGGTTATGGGAATACGTACAAGAGCCATAAGGATAAGTAAGCAGAGAATATACAACACAAGTTGTTCCACCCAGAGAGATCAGCACAACTCAGCCTTGAGAGACCCTCGTGGGTCCCTCGAAGTGTTCAACCCAACAACAAGCGACGCCAACTCACCGGCACACTCCCCGCACCTCCGGAGAACTTGGACAGAGAAGTCGCCGGAAGAGCCACTCAACCATTCCTCCGATGAGGCCACCGGCACNTCCTGGATGGCCATCAAGGGGGAACCCGGCGGCGCCGTGGCGGAGAGAGCCGCCGAGTGGGGATTGGTTCTCAAGACGGACGCCGAGACCGGGAAGCCGCAGGGTGTGGCTGTTCGGAACTCCGGCGGGGACGAACCAAGTGCCAAACTCGCCGCCGCAGCCTCTTCCTCCAGAAGGAACTCCGGCAGATCCTCCGGCGACTCTTCCGACGGTNACGAGTCCCGCGGGATTCCGAGAATCTCGGAGGACTTGAAGGACGCTCTTTCCGCTTTCCAACAAACTTTCGTGGTTTCGGATGCTACCAAACCCGATTACCCGATCATGTACGCCAGTGCCGGTTTCTTTAGGATGACCGGTTATACCTCCAAAGAAGGTTCTGATACGGATCCGGAGGACGTGGCGAAGATAAGGGAAGCGTTGGAAGTAGGGAAAAGTTACTGTGGGAGGTTACTGAATTACAAGAAGGACGGGACGCCCTTCTGGAACCTTCTCACTATTTCACCCATCAAGGACGAAGATGGCAAAGTGCTCAAGTTCATCGGAATGCAAGTGGAGGTTAGCAAGCACACAGAGGGGTCCATGGAGAAGATGTTACGTCCCAATGGATTGCCGGAATCCTTGATTCGATATGATGCTCGTCAGAAAGAGAATGCTACAACATCAGTATCTGAGTTGGTACAAGCCATGAAGCGCCCCCGTGCTCTCAGTGAATCGGCAAACCGTCCCTTTGTCAGAAAATCAGTAGGTGCTGAAGAAGAAGAAGAAGAAAACAAATCAAGGAGAAAATCTGAGAGTGTAGCTTCATTTAGACCGAAATCACAAGGAAGAAATAGAAATTCAATGCTGCGAATCAATGAGCTGCCTGAAAATAATCAGAAAAGCTCTCGTCGCCGCCAGTCCAATGATGAAACAATCGATAATGAAGCTATTGAGGATGTAAGCTCTGAGAGTGAGGAGGATGAGAGGCCTGATAGTTTTGAACTAGATGACAGAGAAAAGAAGAGGGAAAAGCGAAAAGGTCTTGATCTTGCTACCACACTTGAGCGTATTGAGAAAAACTTTGTCATTACTGATCCAAGGCTTCCTGACAATCCTATAATCTTTGCATCTGATAGCTTCTTAGAGCTTACAGAATATAGTCGTGAAGAAATATTGGGCAGAAATTGCAGGTTTCTGCAAGGACCTGAAACTGATCCAGCAACTGTGAGAAAAATTAGAGAGGCAATTGACAACCAAACAGAAGTTACTGTGCAACTCATCAATTATACAAAGACTGGCAAAAAGTTCTGGAACCTGTTTCATTTGCAACCTATGCGTGATCAGAAGGGAGAAGTACAATATTTTATTGGTGTTCAACTTGATGGTAGTCAACATATAGAGCCTCTTCACAACTGCATCGCAGAAGATACTGCAAAAGAGGGAGAACAATTGGTCAAACAAACTGCAGACAACGTTGATGAGGCAGCGAGAGAACTTCCGGATGCTAATCTGAAACCAGATGATTTATGGATGAATCATTCAAAAGCGGTTCGCCCCAAACCTCATAGGAAGGATGATGCTGCTTGGAGAGCTATCCAGAAGATCCTAGAAAGTGGAGAACAGATAGGCCTAAAGCACTTTAGGCCAATTAAACCTTTGGGGTCTGGAGACACTGGCAGTGTGCATCTGGTGGAGCTACAGGGAACCGGTCAATATTTTGCCATGAAGGCGATGGATAAAGGTGTTATGCTCAATCGTAACAAGGTGCATAGAGCTTGCACAGAGAGACAAATCCTTGACATGTTGGACCACCCTTTTCTGCCTGCATTATATGCTTCTTTTCAGACAAAAACACATGTTTGTTTGATAACTGATTACTGTCCTGGTGGAGAACTATTCCTGCTTCTTGACCGGCAGCCAACAAAGGTTCTCAAGGAAGATGCTGTGAGATTCTATNCTGCTGAGGTATTGATTGCATTGGAGTACCTTCATTGTCAAGGGATAATTTATAGGGATTTAAAGCCAGAAAATGTGCTGATCCAGAGCAGTGGGCATGTGTCTCTAACAGATTTTGATTTGTCATGTTTAACATCTTGCAAGCCACAGCTTATAATTCCAGATACAAATGAAAAGAAGAAGAAGAAGAAAAGGAAACAACAGAAAAGTCAACAGGTTCCAATGTTCATGGCTGAACCCATGAGAGCATCCAATTCTTTTGTTGGCACGGAAGAGTACATAGCTCCGGAAATTATAACTGGTTCAGGCCATACTAGTGCTGTGGATTGGTGGGCTCTAGGTATTCTTCTATATGAAATGCTTTATGGGTATACGCCATTCAGGGGGAAGACAAGACAAAAAACATTTGCAAACATTCTTCACAAAGATCTTAAATTTCCCAAAANCAAACCGGTAAGTGTCCATGCAAAGCAGCTAATTTACTGGTTGTTGCACAGAGATCCCAAAAACAGATTGGGTTCACAAGAAGGAGCTAATGAAATTAAGCGTCACCCATTCTTCCGGGGATTCAATTGGGCTCTAGTTCGTTGCATGAAACCTCCTGAGCTTGATGCTCCTCTCTTGCTGGAAAATGATGAAAAGAAAGAAGCCAAAGATATCGACCCCGGGTTAGAGGATCTACAGAAAAATGTTTTCTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00273	111041	121700	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.2.6

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0000160 phosphorelay signal transduction system

GO:0006468 protein phosphorylation

GO:0007165 signal transduction

molecular_function

GO:0000155 phosphorelay sensor kinase activity

GO:0004672 protein kinase activity

GO:0004871 signal transducer activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000273s00014661.2	PF13426.1	PAS_9	192	278	5.00E-11
Glyur000273s00014661.2	PF13426.1	PAS_9	445	545	6.00E-25
Glyur000273s00014661.2	PF00069.20	Pkinase	634	923	1.40E-63

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.046
SRR1783600	control	0.048
SRR1783602	moderate drought stress	0.283
SRR1811619	moderate drought stress	0.276

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.109
DRR006522	Root Winter glycyrrhizin high producing strain	0.112
DRR006523	Root Summer glycyrrhizin low producing strain	0.138
DRR006524	Root Summer glycyrrhizin low producing strain	0.151
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.343
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.219

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.813
SRR2868004	Drought Stress (root)	4.579
SRR2967015	Control (root)	1.846

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	94.235
SRR9715740	Leaf	65.656
SRR9715741	Leaf	87.410
SRR9715739	Root	0.000
SRR9715742	Root	1.045
SRR9715743	Root	1.438

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.748
SRR8749028	MeJA induced 9h	50.632
SRR8749029	MeJA induced 9h	8.904
SRR8749030	Uninduced	10.104
SRR8749031	Uninduced	0.536
SRR8749032	Uninduced	1.232

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.816
SRR8400027	Control - Root	2.127