Gene detail information of Glyur000273s00014656 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| NR | XP_003620250.1 | 1.86E-169 | Chitinase [Medicago truncatula] |
| COG | YP_003387088.1 | 1.00E-06 | chitinase [Spirosoma linguale DSM 74] |
| Swissprot | tr|Q7M443|CHIT2_TULBA | 3.00E-136 | Chitinase 2 |
| trEMBL | tr|G7KL79|G7KL79_MEDTR | 7.00E-170 | Chitinase {ECO:0000313|EMBL:AES76468.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00273 | 80744 | 82040 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000273s00014656.1 | PF00704.23 | Glyco_hydro_18 | 69 | 244 | 2.00E-17 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.882 |
| SRR1783600 | control | 5.070 |
| SRR1783602 | moderate drought stress | 2.061 |
| SRR1811619 | moderate drought stress | 1.892 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.716 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.591 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.117 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.114 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.918 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.758 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.151 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.739 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 30.313 |
| SRR2868004 | Drought Stress (root) | 30.095 |
| SRR2967015 | Control (root) | 46.613 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 11.885 |
| SRR9715740 | Leaf | 2.674 |
| SRR9715741 | Leaf | 5.934 |
| SRR9715739 | Root | 4.507 |
| SRR9715742 | Root | 4.279 |
| SRR9715743 | Root | 3.616 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 25.170 |
| SRR8749028 | MeJA induced 9h | 43.535 |
| SRR8749029 | MeJA induced 9h | 27.256 |
| SRR8749030 | Uninduced | 48.178 |
| SRR8749031 | Uninduced | 41.504 |
| SRR8749032 | Uninduced | 29.108 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 12.101 |
| SRR8400027 | Control - Root | 18.444 |