Gene detail information of Glyur000273s00014655 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| NR | XP_003597297.1 | 2.26E-137 | RuBisCO-associated protein [Medicago truncatula] |
| Swissprot | tr|P39657|RUAP_SOYBN | 6.00E-43 | RuBisCO-associated protein |
| trEMBL | tr|Q2HU30|Q2HU30_MEDTR | 8.00E-138 | Glycoside hydrolase family 18 protein {ECO:0000313|EMBL:AES67548.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00273 | 77949 | 78809 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000273s00014655.1 | PF00704.23 | Glyco_hydro_18 | 48 | 160 | 1.20E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.583 |
| SRR1783600 | control | 0.550 |
| SRR1783602 | moderate drought stress | 0.221 |
| SRR1811619 | moderate drought stress | 0.261 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.037 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 9.777 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.093 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.777 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 22.346 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 21.770 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.564 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.328 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.277 |
| SRR2868004 | Drought Stress (root) | 1.824 |
| SRR2967015 | Control (root) | 1.898 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.819 |
| SRR9715740 | Leaf | 0.888 |
| SRR9715741 | Leaf | 0.569 |
| SRR9715739 | Root | 0.304 |
| SRR9715742 | Root | 4.799 |
| SRR9715743 | Root | 5.811 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.856 |
| SRR8749028 | MeJA induced 9h | 4.638 |
| SRR8749029 | MeJA induced 9h | 1.662 |
| SRR8749030 | Uninduced | 1.554 |
| SRR8749031 | Uninduced | 0.226 |
| SRR8749032 | Uninduced | 0.695 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.383 |
| SRR8400027 | Control - Root | 2.837 |