Gene detail

Gene detail information of Glyur000273s00014645

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G07710.1	0	Ankyrin repeat family protein
NR	XP_004487042.1	0	PREDICTED: ankyrin repeat-containing protein At5g02620-like [Cicer arietinum]
COG	YP_001937567.1	3.00E-25	ankyrin repeat-containing protein 10_02 [Orientia tsutsugamushi str. Ikeda]
Swissprot	tr\|Q6AWW5\|Y5262_ARATH	0	Ankyrin repeat-containing protein At5g02620
trEMBL	tr\|V7C048\|V7C048_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW22261.1}

Sequence

Transcript Sequence

>Glyur000273s00014645.1
ATTCATTTCCTCGTCTAACCCCGACACAATCACCACCTTTGCAAAAGTTGCTACATTATCGCTGAGTTTGGGTGTACTCTACCAAGTTAATGGCTTCCTAAAAGCTGCCCTAAAAAATCTCAGTTATTTTATGGCTTTCACGGTGTTGTAGACGGAGGCCGCAAAAGGGTTGAGGTTCTTCTTTCAACCCCAGGTAGGTGAATCCAATATGGCAACACCATCGGTGGTGCAGCCACAAGCTGCGCCAGTGAGCACCCCTAGGAAGAAAATGACAAAACAATTAACAGGAAAAAGGGATGATACCCCTTTGCATTCTGCNGCAAGAGCTGGGCATCTGGCTGTTGTGATGGATACCCTTAATGGTACTGAAGAAGATGAGCTCCATGAACTATTGGCCAGGCAGAATCAAGATGGAGAAACAGCCCTTTATGTTGCTGCTGAGTATGGTTACATTGATGTTGTCAGGGAGATGATTCAACACTATGATCTTGCTGATGCTGGAATTAAAGCAAGGAATGGTTTTGATGCATTTCACATTGCTGCCAAACAAGGGGATTTAGGTATTTTGTGGAATGTGAGTTTTTTCAGAGGGGAATCTATCTCAGTCCTGTTTTGCCTTGTTGCAGATATACTGAAGATCCTTATGGAGGCTCATCCTGAATTGACAATGACTGTGGATCCATCCAACACCACAGCTTTGCACACGGCTGCGACACAAGGGCATACCGAGATAGTGGAACTCCTATTGGAAGCAGGAAGTAGCCTTGCAACCATTGCTAAAAGTAATGGGAAAACAGCTTTGCATTCTGCTGCAAGAAATGGCCATTTGGTGGTTGTGAAAGCACTTCTTGAGAAGGAGCCCGGGGTCGCAACACGGACTGATAAGAAGGGCCAGACAGCACTTCACATGGCAGTGAAGGGACAGAATCTTGAGGTGGTAGAGGAGTTGATAAAAGGAGATCCCTCTACAATAAATATGGTTGATAATAAGGGAAACACACCATTGCATATAGCAAGCAGGAAAGGCAGGGCCCAGATTGTAAAGATGCTTCTTGCACAGAAGGAAACAGATACAAAGGCTGTAAATAGATCAGGTGAAACTGCAGTAGACACTGCTGAGAAGACTGGGAACCATGATGTTAAAGCCATTCTATTGGAGCACGGTGTTGAGAGTGCCAAATCCATAAAGCCACAGGGCACAACTACAGCCCGTGAGCTGAAACAAACGGTTAGTGACATAAAGCACGAGGTGCATTACCAGTTAGAACACACTCGCCAAACCAGAAAACGGGTTCAAGGAATCGCGAAACGGATCAACAAAATGCACACAGAAGGACTCAACAATGCAATCAACTCCACAACCGTGGTGGCAGTCCTAATCGCCACCGTGGCCTTTGCTGCCATTTTCACAGTCCCTGGCCAATTCGTTGATGACCCAAACAACATTCCTCCAGGGATGACCCTTGGGGAAGCAAACATAGCCCCACAAGTTCCATTCATCATTTTCTTTGTCTTTGATTCGATTGCGCTCTTCATTTCGCTGGCGGTGGTGGTGGTGCAGACGTCGGTTGTCGTCATAGAAAGCAAGGCGAAGAAGCAGATGATGGCCATCATTAACAAGCTCATGTGGCTGGCNTGTGTGCTTATTTCAGTGGCCTTCTTGGCACTGTCATTTGTGGTGGTGGGGAAGGAAGAGAAGTGGCTGGCAATTGGAGTGACGATTATAGGGACAACCATAATGGCCACAACGTTGGGAACCATGTGTTACTGGGTCATTAGGCATCGCATTGAGGCCTCGAATTTGAGGAACATTCGGAAATCTTCATTGGAAAGCAGGTCAAAGTCTTTTTCAGTGTCTGCTTTCTCAGATTCTGAGCTACTAAACAATGAGTTTAAGAAAATGTATGCAATTTAGGAGTGTTACTAAGCAACAATGTTCTCTTATTCACTCACTCTCCCCAGTTTAAAGCACATGGCCTGATGTGATGGAACTACTATATCCAACAGAGGCGGAACTTCTAAATGTGTATATCTCGAGAAATGGCTAATGTTAATAACGTGCTTAATAATAATTCATAATAGCAAAGTAGTTTCATTTAAAAGAAACGAATAAACCAGCAAGCGGAATGGAGCATTCGAAATTCGAATATCGCAGTCGCAGCAAAGCGTAGTTGAATTAGTCCGTGTCGCCCATAAATAAACAATCGTCCAATTCCGATGAGTTTATCGCTGTTATGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00273	25708	29382	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000273s00014645.1	PF12796.2	Ank_2	30	92	1.10E-07
Glyur000273s00014645.1	PF12796.2	Ank_2	105	186	1.00E-08
Glyur000273s00014645.1	PF12796.2	Ank_2	193	250	1.20E-12
Glyur000273s00014645.1	PF13857.1	Ank_5	255	303	8.70E-11
Glyur000273s00014645.1	PF13962.1	PGG	375	491	3.00E-25
Glyur000273s00014645.2	PF12796.2	Ank_2	30	92	1.10E-07
Glyur000273s00014645.2	PF12796.2	Ank_2	105	186	1.00E-08
Glyur000273s00014645.2	PF12796.2	Ank_2	193	250	1.20E-12
Glyur000273s00014645.2	PF13857.1	Ank_5	255	303	8.70E-11
Glyur000273s00014645.2	PF13962.1	PGG	375	491	3.00E-25

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	28.854
SRR1783600	control	29.067
SRR1783602	moderate drought stress	17.877
SRR1811619	moderate drought stress	17.870

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	32.387
DRR006520	Root Summer glycyrrhizin high producing strain	31.480
DRR006521	Root Winter glycyrrhizin high producing strain	4.289
DRR006522	Root Winter glycyrrhizin high producing strain	4.127
DRR006523	Root Summer glycyrrhizin low producing strain	23.130
DRR006524	Root Summer glycyrrhizin low producing strain	23.526
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.243
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.223

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	18.701
SRR2868004	Drought Stress (root)	17.562
SRR2967015	Control (root)	18.149

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.111
SRR9715740	Leaf	1.156
SRR9715741	Leaf	1.258
SRR9715739	Root	3.664
SRR9715742	Root	8.556
SRR9715743	Root	8.308

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.357
SRR8749028	MeJA induced 9h	2.279
SRR8749029	MeJA induced 9h	3.712
SRR8749030	Uninduced	2.127
SRR8749031	Uninduced	2.750
SRR8749032	Uninduced	8.754

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	18.203
SRR8400027	Control - Root	19.464