Gene detail

Gene detail information of Glyur000273s00014644.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G28630.1	0	3-ketoacyl-CoA synthase 12
NR	XP_003547033.2	0	PREDICTED: 3-ketoacyl-CoA synthase 12-like [Glycine max]
COG	YP_004166586.1	7.00E-14	naringenin-chalcone synthase [Cellulophaga algicola DSM 14237]
Swissprot	tr\|Q9SIB2\|KCS12_ARATH	0	3-ketoacyl-CoA synthase 12 (Precursor)
trEMBL	tr\|I1MDK4\|I1MDK4_SOYBN	0	3-ketoacyl-CoA synthase {ECO:0000256\|PIRNR:PIRNR036417}

Sequence

Transcript Sequence

>Glyur000273s00014644.1
ATGGAGTTCCTCACTTTACTTTATGTTGTTATAACATTGTACTTGTGTTTCCTGATCTGGAAGCTGTTTGATCAGAGAAGGGACCAAGAGTGCTACATATTGGACTACCAATGCTACAAGCCAGGTGATGGGAGAAAGCTTGGAACTGATTGTTGTGGTAAGATCATAGGAAGGAATGAGAACTTGGGTCTGAATGAGTACAAGTTCTTGCTCAAGGCCATTGTGAACTCTGGCATTGGGGAGGAAACTTATGCCCCAAGAAACATCCACGAAGGCCGCGAGTTGAACCCCACTTTGGTGGATGGGATCACAGAGATGGAGGAGTTCTTCCATGACAGCATTGCCAAGCTTCTAGCAAAATCAGGAATTTCCCCATCACAGATTGATGTCCTTGTGGTGAATGTCTCCATGTTTTCTTCAGTTCCTTCCTTGGCTTGTAGGATCATCAACCACTACAAGATGAGGGAGGACATAAAGTNTTTCAATTTAACTGGGATGGGTTGTAGTGCTAGCCTCATTTCTTTGGACATCATTAGGAACATTTTCAAGTCCCAAAAGAACAAGTGTGCTCTTTTGGTGACTTCAGAGTCTCTAAGTCCAAATTGGTATTCTGGGAATGACAGGTCAATGATTCTGGCCAATTGTTTGTTCAGAACTGGTGGATGTGCCATTCTTCTCACAAACAAAAGGTCCTTAAGGCACAGGGCAATATTGAAATTGAAGTGCTTGGTGAGGACTCATCACGGGGCTAGAGATGATTCCTATACTTGTTGCAACCAAAAGGAAGATGACCAAGGTAAGCTTGGCTTTTACTTAGCCAAAAATCTCCCCAAGGCAGCTACAAGGGCTTTTGTTGACAACTTAAGGGTATTGTCACCAAAGATTTTGCCAGCTAGGGAGTTGCTAAGGTTCATGTTTGTGTCACTCATAAAAAAGGTGACAATGACAAAAGCTAGTAGTGCCACTAAGTCTTCTTCAGGGGTGGGAATTGGATCTGCCAAATCCCCATTGAACTTCAAAACTGGGGTTGATCATTTCTGCCTCCACACTGGAGGAAAGGCTGTGATTGATGGCATTGGGTTGAGTTTGGATCTGAGTGAGCATGACCTTGAGCCAGCTAGGATGACACTACACCGTTTTGGGAACACATCAGCTAGTAGCCTTTGGTATGTGCTTGGTTACATGGAGGCCAAGAAGAGGCTCAAGAAGGGTGNCAGGGTATTGATGATAAGCTTTGGTGCTGGCTTTAAATGCAACAGCTGTTTGTGGGAGGTGATGAGGGACTTGGAAGATAGGAATGTGTGGGATGATTGCATTGATGACTACCCACCAGAGTCATTGGCCAACCCTTTCATGGAGAAGTTCGGTTGGATCAACAGTGTTGCGGATGCAAAAAACTTCAAGCTTCCTGATTTTCTCAAGTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00273	14875	16299	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K15397	KCS	EC:2.3.1.199	Fatty acid elongation	map00062

Gene Ontology

biological_process

GO:0006633 fatty acid biosynthetic process

GO:0008152 metabolic process

GO:0008610 lipid biosynthetic process

cellular_component
GO:0016020 membrane

molecular_function

GO:0003824 catalytic activity

GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000273s00014644.1	PF08392.7	FAE1_CUT1_RppA	25	312	2.00E-112
Glyur000273s00014644.1	PF08541.5	ACP_syn_III_C	343	424	8.70E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.027
SRR1811619	moderate drought stress	0.027

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.065
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.503
SRR2868004	Drought Stress (root)	0.296
SRR2967015	Control (root)	0.121

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.651
SRR9715740	Leaf	0.109
SRR9715741	Leaf	0.183
SRR9715739	Root	0.882
SRR9715742	Root	1.113
SRR9715743	Root	2.681

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.144
SRR8749028	MeJA induced 9h	5.206
SRR8749029	MeJA induced 9h	2.775
SRR8749030	Uninduced	4.864
SRR8749031	Uninduced	0.054
SRR8749032	Uninduced	0.345

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.294
SRR8400027	Control - Root	0.810