Gene detail information of Glyur000272s00017864 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G29500.1 | 3.00E-59 | HSP20-like chaperones superfamily protein |
| NR | XP_003608277.1 | 4.17E-90 | 18.2 kDa class I heat shock protein [Medicago truncatula] |
| COG | YP_005887446.1 | 6.00E-23 | heat shock protein Hsp20 [Marinobacter adhaerens HP15] |
| Swissprot | tr|P04793|HSP13_SOYBN | 1.00E-90 | 17.5 kDa class I heat shock protein |
| trEMBL | tr|Q2HTU2|Q2HTU2_MEDTR | 2.00E-90 | Uncharacterized protein {ECO:0000313|EMBL:AFK46004.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00272 | 173702 | 174154 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000272s00017864.1 | PF00011.16 | HSP20 | 46 | 149 | 8.40E-34 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.014 |
| SRR1783600 | control | 1.056 |
| SRR1783602 | moderate drought stress | 2.396 |
| SRR1811619 | moderate drought stress | 2.491 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.959 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.886 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.310 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.735 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.532 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.870 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.863 |
| SRR2868004 | Drought Stress (root) | 0.661 |
| SRR2967015 | Control (root) | 0.110 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.154 |
| SRR9715740 | Leaf | 0.536 |
| SRR9715741 | Leaf | 1.598 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 3.918 |
| SRR9715743 | Root | 2.306 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 21.690 |
| SRR8749028 | MeJA induced 9h | 15.200 |
| SRR8749029 | MeJA induced 9h | 26.016 |
| SRR8749030 | Uninduced | 1.377 |
| SRR8749031 | Uninduced | 3.729 |
| SRR8749032 | Uninduced | 12.802 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.295 |
| SRR8400027 | Control - Root | 4.544 |