Gene detail

Gene detail information of Glyur000272s00017861

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G65500.1	0	U-box domain-containing protein kinase family protein
NR	XP_006572996.1	0	PREDICTED: putative U-box domain-containing protein 50-like [Glycine max]
COG	YP_001957949.1	9.00E-13	hypothetical protein Aasi_0849 [Candidatus Amoebophilus asiaticus 5a2]
Swissprot	tr\|Q9FGD7\|PUB50_ARATH	0	Putative U-box domain-containing protein 50
trEMBL	tr\|I1J504\|I1J504_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA01G02780.1}

Sequence

Transcript Sequence

>Glyur000272s00017861.1
ACAAAAGTCCAAAGCTGGCCGTTCCCTTAGACCCTTCCCTTTGCAAATCCTGATAAAATCAGTGTATATATTATATAATAAGGTCTAAACCAAACACACTTGTTTAAAACCAGAAAAAGAAAGCTTTGAAATTGATGATATACCAACCCTTTTCGTTTTCTTTTACAAGGTTATTTTCACACTAGACCTCTGCCGAGTGAACCTGATTACAGGTTTATACGAGTGTCCCTTGATATGTGTTTCACTGGAATTGATCTTGCTGCTGCTGCTTCTTGATTCTGAGCAACCAAAGAGGGAAACTGGGTATATAGCTTGGAACTACAATCAAATGGATGCAACCCAAAAGGAGAAAATCTATGTTGCTGTTGGTAATGATTCCCAGGATGGATTTAAGACTCTGAATTGGGCTCTCAAGAAATGGAATTCTCAACCAATTTCAATTGTTATTCTCCATGTGACTCACAACTTCTCCAAGGATTATGTTTATACACCATTTGGGAAGCTTCCAGCAAGATCTGTAAATGATGAGAAACTAGAAGTCCTGAGGAAAGATGAGAAAGACAGAATCAACAAGCTGTTTACCAAGTATATTGCTTTCTGCGGCAAGGTGCCAGCAGAAATTGTTGAAGTTGAGAAATTTGATGAACCATTACAAAAGCGCATGGTAGANTTGATCTTTGGTCTAAGAATAACCAAATTGGTGATGGGGAAATCAAGAGGTGCAATTAGTGGATTGTTCTATGTTTATCAGCACAAGCCTGGTTTCTGTGAATTGTTCATTATTTGTTCTGGCAAGCAAGTTTTTCTCAAGGGAAATAACAATGATGAGAAAATCATGGAAGATGATAATGGAGTCACAGTTGCAAGAATGAGAGANAAGATAACATTCAAAGATTGGCTAGACAAAATGTTTAATGACAAAACCAATGATGATGGAATTGCATCTCCTTCATCAACAACCAATTTGGGCCAAAACAACCAGTGGGAATTTTATCTCCAAGAAATAGAAAATTATTATCAAGAATTGATGTCTTCAAATTTGAATGAGGAAGGAGACAATGACGAGTCGCAGATTGGTCCAACTGAGACAGATGTCACTGAACGCAACATTTCTTCTNATGTGAGTAATGCAGAAAAATATGAGATGCTGAAAAATAAATTGAACGAAACTCGCAAAACCATCCAGTTGAAGAGGAAAGAAGCCAAGGACAGTATAGAGAGACACGCAAAAGCTGAATGGGCAATTAGTTTATCCAACAGCAGGGCTGAGGAAATTGAAGGTCAAATAAGGGAAGAAGTGAGTGCAAGGGAAGAGCTAAAGAAGGAATTGCAGGGAGAGAAAAGGCAAATAGAGGAGATGAGAATGGAGATAGAAGAGAGGAAAAGGAGGTTGAGTTCACTGGCAGAGCTGCAATCGGAATTGTCAAACAGGCTTCACATTTCGACAGTTGCGAGGTCAAGAGCGGAGGCGCAACGGGAGAGAGTGGTGAGGGAGAGGAGCGAGATGGTAAGGGAGATAGAGCAATTGCGGGGGCAGAGGGATGTGCTGAATAGGAGGATCGAGTTTTGCAAGCAGAAGGATGCCATAGGAATGGTTGCGAGGATGAGCGACAACAACAGCATCAGCACAAGTTGTGGTTTCAGGGAGTACAGGGAGGAGGAATTGAGGTTGGCAACCGACGATTTCTCGGAGCNGCTAAGGTTGAGGTCTGGTGGGGATTGGACCAATGTGTATAGAGGACGCTTCAACCATTCCACTGTTGCAATCAAGCTGCTCCCTTGTTTGTCCCAACAGGATTTCCANTCCAAGGTAAAAACATTCACAAGTTTCTTCTCTCCGTTTGATCATCACCAAAAGCAACCTCATCTGGTTGCCATGATGGGCTTTTGCTCCGAGCCCAAATGCATAATTTTTGAATACATGTCCAATGGAAGCTTACGAGACATGTTGTTCTCAAGGAGAAGAAATCGAGCCTTACGGTGGCACGACCGAATACGAATAGCGACAGAAGTTTGCTCGGGCCTGAGCTTTCTNAATTCAGCAACGCTAAGGCCCGTCGTTCATTGTCATTTGACCCCATCCAACATCCTCCTAGACCGCAATTTAGTTGCAAAGATTACGGGCTTTGGGCTTCATAAGTGCCAAGACAAGGCTGAATGTAACGTTGAGTCAGATTTGCGGGCCCTAGGGGTTTTGTTGATGCAACTTTTGACTGGAAGAAACTGGGCCGGGCTCGTTGGGGAGGCCGTGACAGAGGATATGGATAGAGANCCCTTGGTTCACGTTCTTGATGATGTGGCGGGACAATGGCCATTAGATCTAGCGAAGGAACTTGCGGGCCTAGCTATGAGTTGNACGTGCGTGAAAAATAAGCCCAACCCGGAACTGAGCATTGCAAAGGTCTTAGAGGAACTCAAAAGGATAAGAAGAAAGGGTGAGGAAATAGTTGCAAGGGAAGGTCGAAAGGTAATCATTGGTGGATGTATAGATAGAGAGGGCTCCAACGATGTGCCTAGCATTTTCCAATGTCCTATACGTCAGGAGGTAATGAAAAATCCANATGTTGCGGAAGATGGATTTTCTTATGAGCTGGAAGCAATAGAGCAGTGGTTGCAGTCGGGGCATGACACATCACCCATGACAAACTTAAGGCTGAAGCACACACTCCTTACCCCTAATCACATCCTCCGTTCCTTAATCGAGGACTGGCACAGCAACAAATCAACTNAAGTTGCAAATTAATACCAAGATTAATTTTTTTGGTTCATTGGATTTTGTACAGTTAAACTGAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00272	145137	151977	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.4.1
Ubiquitin Family	U_box

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006468 protein phosphorylation

GO:0016567 protein ubiquitination

molecular_function

GO:0004672 protein kinase activity

GO:0004842 ubiquitin-protein transferase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000272s00017861.1	PF07714.12	Pkinase_Tyr	463	610	1.00E-21
Glyur000272s00017861.1	PF04564.10	U-box	728	799	4.90E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.697
SRR1783600	control	6.646
SRR1783602	moderate drought stress	12.014
SRR1811619	moderate drought stress	12.028

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.076
DRR006520	Root Summer glycyrrhizin high producing strain	5.964
DRR006521	Root Winter glycyrrhizin high producing strain	20.049
DRR006522	Root Winter glycyrrhizin high producing strain	19.456
DRR006523	Root Summer glycyrrhizin low producing strain	8.512
DRR006524	Root Summer glycyrrhizin low producing strain	8.548
DRR006525	Leaf Summer glycyrrhizin high producing strain	30.288
DRR006526	Leaf Summer glycyrrhizin high producing strain	30.308

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	27.441
SRR2868004	Drought Stress (root)	30.725
SRR2967015	Control (root)	31.992

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	35.981
SRR9715740	Leaf	52.653
SRR9715741	Leaf	44.601
SRR9715739	Root	2.088
SRR9715742	Root	9.720
SRR9715743	Root	8.346

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	52.859
SRR8749028	MeJA induced 9h	42.839
SRR8749029	MeJA induced 9h	48.873
SRR8749030	Uninduced	69.216
SRR8749031	Uninduced	138.051
SRR8749032	Uninduced	52.382

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	28.242
SRR8400027	Control - Root	20.037