Gene detail

Gene detail information of Glyur000272s00017859

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G38050.1	0	Xanthine/uracil permease family protein
NR	AES95999.2	0	nucleobase-ascorbate transporter-like protein [Medicago truncatula]
COG	YP_007308721.1	4.00E-71	xanthine/uracil permease [Natronococcus occultus SP4]
Swissprot	tr\|Q6SZ87\|NAT11_ARATH	0	Nucleobase-ascorbate transporter 11
trEMBL	tr\|G7JWD8\|G7JWD8_MEDTR	0	Nucleobase-ascorbate transporter-like protein {ECO:0000313\|EMBL:AES95999.2}

Sequence

Transcript Sequence

>Glyur000272s00017859.1
CANACCGTTTCTTTCTACTTTCTAGTTCTAGTTCAAGTGTGGCTGCAACTTCTTCTCCCCCACTCTCTGNTTGTAGTAAAAAACTCATCTTTTTTCTTTCCACTGTACTGGGTTGTGCTTATTTATCAGTGCCATTTGGGAAAAAGTGTAAATGGAAACTGGGTCGAAGGAGGCTGTGAGGAGTGTGAGGGGAGGCACTGGGAAAAGACAGGGTCCAGTGGAAGCCAAAGTGGAACCATTTGTGCCAAAAACTGATCACAATCCAAGAGATTTGCGGTCGTGGGCAAAGAGAACCGGGTTTGTATCTGATTACTCAGGGGAAGCAGGTACCAGTGGCAGTGAAAAGTTCGAACCTTTTGAGCNTAGAGGAAGAGGGTCCTCGTCCTCTCCAAAGATAGAGATAGATCCGGTCCTAGGGAGGACGAGACCCAACAACAGGGGCATTGAGATCCAACCAGCTCCGCAAAGGACTGAGAATGAAACTGTTTTGGCTTTGGATCCTNATGGTGAGAAGAGAGTTGGTTTCAGAGGGAATGAGAATGGTGATGTCAATGGTGGTGGCCATGGAGTATCTGCAGTTGCTCCAGTGCCAGAGGAAAAGAATGAGGAGGAGGAGGTGGAGAATGTGGCACCACAAGGAGAGGTCAAGGTCAATTTGTATCCGGAAGGGGTGGAACCTGTGGATGGTGGAGGGCAGGGACCTTCTGGATTGAAGTGTGGGCTCAAAGAAAATCCTGGTTTTGTATCTCTNATCTATTACGGCCTACAGCACTATCTATCATTGGCTGGCTCACTTGTATTGATCCCATTAGTCATGGTACCAGTCATGGGTGGAACAGATAAGGATAATGCTACAGTAATTTCTACAATGCTGTTTCTTTCTGGCATCACAACTATACTNCAATCCTACTTTGGTACCCGTCTGCCTTTAGTTCAAGGGAGCTCATTTGTGTATTTAGCACCGGCATTAGTCATTATAAATGCTCAAGAATATCGCAATCTTACAGAACATAAATTTAGGCACATAATGAGGGAACTCCAAGGAGCTATAATCGTTGGTTCAATATTCCAATGTTTCCTGGGTTTTAGCGGTTTGATGTCTTTCCTACTCAGGTTAATCAACCCAATTGTGGTTGCACCAACTGTTGCTGCTGTAGGTTTAGCATTCTTCAGCTACGGTTTTCCACAAGCTGGCACTTGCTTAGAAATTACTATTCCACAAATAGCACTGGTNCTGATATTCACTCTGTATCTTCGAGGAATATCTATCTTCGGGCNCCACTTATTTCGGATTTATGCTGTTCCCTTGAGTGTAACAATAGTTTGGATATNTGCATCCTTTTTAACAGCTGGGGGTGCATATAACTACAAAGGATGCAATCCCAATATACCAAGTTCAAACATTCTGACGGATGCATGTAGAAAGCATGCATATACCATGAAGCATTGCAGGACTGATGTTTCCAATGCATTGTCTACTGCTGCATGGGTCAGAATTCCTTACCCTTTACAGTGGGGTATCCCTATTTTCCATTTCAGGACTTCCATAATCATGGCCATAGTGTCACTTGTTGCCTCTGTAGATTCAGTTGGAACTTATCGTACCGCATCTCTGCAAATTAATTTGAGGCCTCCAACTCCAGGAGTTGTGAGCAGAGGAATTGCACTGGAGGGTTTCTGTAGTATATTGGCTGGTCTTTGGGGTTCAGGAACTGGTTCAACGACTTTGACAGAAAACGTGCACACAATTAATACCACAAAGGTGGCAAGTCGGAAGGTAGTGGAACTTGGAGCAGTTTTCTTGATCCTCTTCTCATTTATAGGAAAAGTGGGTGCCCTTCTTGCTTCCATCCCACAGGCATTGGCTGCTTCTGTACTGTGTTTCATGTGGGCTCTTACTGCAGCATTAGGCCTCTCAACTTTACAGTATGGCCAATCAACCAGCTTCAGGAACATAACAATAGTCGGCGTTGCATTGTTCCTTGGCATGTCCATTCCTGCTTATTTTCAACAATACCAGCCTGAGTCCAGTCTGATACTGCCCAGTTATCTGGTTCCTTATGCCGCAGCATCAAGTGGTCCATTTCATTCAGGCATTAAACAACTTGATTTTGCCATCAATGCTCTTATGTCATTGAACATGGTGGTTACGCTGTTGGTGGCATTCCTACTGGACAACACTGTCCCAGGAAGTCAACAAGAACGAGGTGTGTATACATGGTCGAGAGCTGAAGACATTGCCGCTGATGCCTCACTGCAATCCGAATATTCTCTGCCAAAGAAAGTTGCAAAGTGTTGCTGTTGGTTCAAATGTTTGGGAGTCTAACAATACTTTTGGACATTTTAATCTTTGTAACATTTCTTCAATTCTTCTACGAAAAAGGTCACTCCCCTCGGATGTGTCTATTATTCCTTGTTCTCTTCCGTGGGGCTCTTTAGAATAAGATATTGCAACTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00272	139554	144872	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006810 transport

GO:0055085 transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0005215 transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000272s00017859.1	PF00860.15	Xan_ur_permease	200	619	3.80E-68
Glyur000272s00017859.2	PF00860.15	Xan_ur_permease	200	602	1.60E-65

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	14.370
SRR1783600	control	14.132
SRR1783602	moderate drought stress	11.801
SRR1811619	moderate drought stress	11.958

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	14.226
DRR006520	Root Summer glycyrrhizin high producing strain	14.038
DRR006521	Root Winter glycyrrhizin high producing strain	2.907
DRR006522	Root Winter glycyrrhizin high producing strain	2.867
DRR006523	Root Summer glycyrrhizin low producing strain	22.391
DRR006524	Root Summer glycyrrhizin low producing strain	22.169
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.555
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.607

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	18.087
SRR2868004	Drought Stress (root)	16.696
SRR2967015	Control (root)	20.702

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.219
SRR9715740	Leaf	3.462
SRR9715741	Leaf	1.820
SRR9715739	Root	11.630
SRR9715742	Root	8.112
SRR9715743	Root	9.026

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	29.391
SRR8749028	MeJA induced 9h	16.373
SRR8749029	MeJA induced 9h	18.074
SRR8749030	Uninduced	3.898
SRR8749031	Uninduced	5.903
SRR8749032	Uninduced	3.874

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	14.775
SRR8400027	Control - Root	16.209