Gene detail information of Glyur000272s00017854 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G65490.1 | 2.00E-13 | |
| NR | XP_007141690.1 | 2.70E-19 | hypothetical protein PHAVU_008G217000g [Phaseolus vulgaris] |
| Swissprot | tr|Q9LSM5|SGT1_ARATH | 3.00E-15 | Protein SGT1 homolog At5g65490 |
| trEMBL | tr|V7B7A2|V7B7A2_PHAVU | 1.00E-19 | Uncharacterized protein {ECO:0000313|EMBL:ESW13684.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00272 | 120316 | 120675 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.663 |
| SRR1783600 | control | 2.485 |
| SRR1783602 | moderate drought stress | 4.044 |
| SRR1811619 | moderate drought stress | 3.803 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.086 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.326 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.501 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.741 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.321 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.193 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.921 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.104 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 9.529 |
| SRR2868004 | Drought Stress (root) | 11.300 |
| SRR2967015 | Control (root) | 12.152 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 11.061 |
| SRR9715740 | Leaf | 16.006 |
| SRR9715741 | Leaf | 10.172 |
| SRR9715739 | Root | 4.071 |
| SRR9715742 | Root | 8.756 |
| SRR9715743 | Root | 7.629 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 14.751 |
| SRR8749028 | MeJA induced 9h | 4.016 |
| SRR8749029 | MeJA induced 9h | 5.841 |
| SRR8749030 | Uninduced | 3.277 |
| SRR8749031 | Uninduced | 1.461 |
| SRR8749032 | Uninduced | 2.918 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 11.858 |
| SRR8400027 | Control - Root | 10.110 |