Gene detail information of Glyur000272s00017844.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G65470.1 | 0 | O-fucosyltransferase family protein |
| NR | XP_006587571.1 | 0 | PREDICTED: uncharacterized protein At1g04910-like isoform X2 [Glycine max] |
| Swissprot | tr|Q8W486|Y1491_ARATH | 8.00E-81 | Uncharacterized protein At1g04910 |
| trEMBL | tr|I1L4R4|I1L4R4_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA09G33160.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00272 | 67790 | 74056 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GTnc |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000272s00017844.1 | PF10250.4 | O-FucT | 105 | 431 | 2.10E-77 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 247.402 |
| SRR1783600 | control | 247.699 |
| SRR1783602 | moderate drought stress | 252.152 |
| SRR1811619 | moderate drought stress | 240.568 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 269.771 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 267.549 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 314.942 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 307.651 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 167.730 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 166.186 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 183.446 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 183.328 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 232.727 |
| SRR2868004 | Drought Stress (root) | 151.996 |
| SRR2967015 | Control (root) | 176.167 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 183.378 |
| SRR9715740 | Leaf | 124.794 |
| SRR9715741 | Leaf | 131.071 |
| SRR9715739 | Root | 114.202 |
| SRR9715742 | Root | 201.347 |
| SRR9715743 | Root | 178.564 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 165.723 |
| SRR8749028 | MeJA induced 9h | 120.628 |
| SRR8749029 | MeJA induced 9h | 131.283 |
| SRR8749030 | Uninduced | 105.195 |
| SRR8749031 | Uninduced | 32.046 |
| SRR8749032 | Uninduced | 49.540 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 302.156 |
| SRR8400027 | Control - Root | 256.023 |