Gene detail

Gene detail information of Glyur000272s00017841

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G22540.1	6.00E-55	K-box region and MADS-box transcription factor family protein
NR	NP_001240951.1	1.72E-89	MADS-box protein SVP-like [Glycine max]
Swissprot	tr\|Q9FVC1\|SVP_ARATH	2.00E-67	MADS-box protein SVP
trEMBL	tr\|E3NYP9\|E3NYP9_SOYBN	6.00E-90	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G04710.1}

Sequence

Transcript Sequence

>Glyur000272s00017841.1
GATTGGTGGCTTTCATCTCAAAGCTGTTCAAGAGAACAACTCACAAGCCAAACAACTAGTAGCACCAAAACCACCAACATCCCCCAATATTAATATCAACGCCCTTTCTCTCCCAAATAAGGAAAGCAAAATCCTCATGTACAATTCAGCAACAAATTCCTTACTCATCTAAGTCCTCAACATCCCCCACCAACCGCACCCCACACACACCACAACGCTCCAATATTCCTCAAAAAGAAAGAGAGAAAAAAAAAAACATTCAAAACCTTTGTCTCTGCTCCCAGGATCTGAGAAGAAGAAGTGAGAAAAACAATTTCCTCTCCTCAGTGATCTCACTGGAAATTCTTTCTTAAAGAAGCTAAATTTAGCTAAATGCCTGCATATTATTTCTTCTTCTGCTATCATCACATGTCCATCTCAATGTCACCCTCCCACTACTAGAACGCGCCTTTGCTTTTGCTGCTATATATTGCTTTATTACAATAATAAAAACACACACCCCATAAATAGTCAACGACCCAGCTTTCCTTTGCTTCGCTTGCTTTTGTCTTTTCCTTTTTTAGATTTAAGGTGGATTTGAGAATGGCGAGGGAGAAGATTCAGATAAAGAAGATCGATAACGCCACGGCGAGGCAGGTAACGTTCTCGAAGCGACGCAGAGGGCTGTTCAAAAAGGCTGAGGAACTCTCTGTTCTCTGTGATGCTGATGTTGCCCTCATTATCTTCTCTTCCACTGGCAAACTCTTCGAGTATTCCAGCTCAAGCATGAGGGAAATACTTGAAAGGCATCATTTGCACTCANAGAACCTGGCAAAGCTGGAACAACCGTCTCTCGAGTTGCAGGCAGCTGAGGGGAGAGGATCTTCAAGGTTTAAATATCGAAGAATTGCAGCAATTGGAGAGGTCTCTCGAAACTGGGTTGGGGCGCGTAATAGACAAGAAGGTCGTCACTCTTCAATTGGAATGCATTTGAAGGAAGAGAACGAGCGACTAAAGCGACATGTGGCGGGCATAGTTAACGGCAAAAGACACGGCGGTACTGAGTCGGAGAACTTGATTACGGAGGAAGGTCAATCCTCGGTGGAGTCTGTCACTAACGTTTGCAACTCCGCTGGACCTCCCCACGACTATGAAAGCTCTGACACATCCCTCAAGTTGGGGCTTCCATACACCGGGTGAAGGATTAATGTGTGTGTGGGAGTTAAAACTTTAACAGGCTAATTAAAGGTGAACAGGGATTATGGTCTGCTTTAATCCCACCGAGGAATACGGTGGTATGGTATATATATGTATTAGTAATTTAGCAATGACTTCCGGGGTACTAGAATGTCATTCAGAAATTGATTAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00272	46246	51787	+

Gene family

Gene family	subfamily
Transcription Factors Family	M-type

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003677 DNA binding

GO:0046983 protein dimerization activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000272s00017841.1	PF00319.13	SRF-TF	9	59	8.70E-27

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	20.414
SRR1783600	control	20.119
SRR1783602	moderate drought stress	18.200
SRR1811619	moderate drought stress	17.718

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.780
DRR006520	Root Summer glycyrrhizin high producing strain	6.143
DRR006521	Root Winter glycyrrhizin high producing strain	9.869
DRR006522	Root Winter glycyrrhizin high producing strain	9.200
DRR006523	Root Summer glycyrrhizin low producing strain	14.877
DRR006524	Root Summer glycyrrhizin low producing strain	14.349
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.034
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.942

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	25.846
SRR2868004	Drought Stress (root)	24.658
SRR2967015	Control (root)	25.591

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	17.498
SRR9715740	Leaf	13.115
SRR9715741	Leaf	18.013
SRR9715739	Root	13.998
SRR9715742	Root	19.771
SRR9715743	Root	19.556

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.706
SRR8749028	MeJA induced 9h	11.418
SRR8749029	MeJA induced 9h	4.390
SRR8749030	Uninduced	7.523
SRR8749031	Uninduced	0.378
SRR8749032	Uninduced	0.539

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	32.909
SRR8400027	Control - Root	25.795