Gene detail

Gene detail information of Glyur000272s00017835

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G04190.1	4.00E-147	Tetratricopeptide repeat (TPR)-like superfamily protein
NR	NP_001241273.1	0	uncharacterized protein LOC100790717 [Glycine max]
COG	YP_006447374.1	4.00E-12	Tfp pilus assembly protein PilF [Desulfomonile tiedjei DSM 6799]
Swissprot	tr\|Q5XEP2\|HSOP2_ARATH	2.00E-22	Hsp70-Hsp90 organizing protein 2
trEMBL	tr\|C6TJ63\|C6TJ63_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G00700.1}

Sequence

Transcript Sequence

>Glyur000272s00017835.1
AAAAAATATATATATCTATATCTATATGAAAAAAGGCATTCCCAGAACTGAAGGTAAAAGGTTCAGGAAGGAAGCCAAACAGTGGCTAAACCCTACAAACATTTGCCACCCGAATCACAAATTTTATTCATAAGGTTACAAAAAAGTAAATAAACAGAGAGAAGAAGAAGAAGAAAAGGTAAAGATAATCGATGGCAGAAACAAAAGAAGGATCATCAGGTGGTTCGGAGATGTCTCTGAAGGATCAGGGCAACGAGTTTTTCAAGTCAGGCAAGTATCTCAAAGCTGCTGCACTCTACACTCAAGCCATCAAACAAGACCCTTCAAACCCCACACTCTATAGTAATCGTGCTGCAGCATTGCTGCAATTGGATAAGCTTAGTAAAGCTCTCGAAGATGCTGAAATGACAATAAAATTAAAACCCCAATGGGAAAAGGGCTATTTCAGGAAGGGAAGCATATTGGAGGCCATGAAACGATATGATGATGCTTTAGCTGCCTTTCAGATAGCTTCGCAGTACAACCCACAAAGTCAAGAAGTATCAAAAAAGATAAAGAAGATAAACCAACTAGTGAGGGATAGCAAGCGAGCTCAAGAACTGGAGAACATGAGATCTAATGTTGATATGGCCAAACATTTGGATACATTGAAACCTGAAATGTCTGAAAAGTATGGATCTGAAGAATGCTGGAAAGACATGTTCTCATTCCTTGTTGAGACTATGGAGACTGCTGTAAAATCATGGCATGAAACTTCTTCAGTGGATGCTAGAGTTTACTTTCTTCTTGATAAGGAAAAGACACAGACGGATAAATATGCACCAGTTGTGAATATTGATAAGGCCTTTGAATCACCACATACACACNGCAACTGCTTTCCATTTCTGAGGCAGTATGCTGAGGAGTCTTTTGCCAAAGCAGCATGCTTAGTGACCGCCAAAAGCATCATTGCTTATCCACAGGTAACTTTTGATGTCGTCTGGAAAGGCCAAGGATCAAGGAAGTGGAAACATGCACAGAATGATGGTTTCTTNGTTCAATTTGAGTCACCTTCCCTACGAAAGTTGTGGTTTATTCCCAGTTCGAATGAAAAGGGACATACATTGTGCAGGGACCCAGAAGTTTTGGACATTGGTGCTCATGAAGTTCTTCCACGCATATTCAAAGAAAAGCTGCCCCGTTCTTAGTGTACTTTACTAGTATTTGGTGAATATTTTACATGATAAAAATGATAGGCTCACAGGAAGTTTCAGTGCCTATGTTTTTGTTGTCTCCTTGGAATGTAACAAAAGTATTGGCAAGATGTGCTTCATATNTTTGTTAGAATTTTAGTTTTTTTGTTTCTATTGAATTATCCAAGCCTTCAAGGAGTTGCATTTTTTTTTTATTGCTTGATTGCTCATAGTCTATTCTGGTGTTTTGGAGACTTTGGGCCATGAGTTTGCTTATTCCAGATATGACACTCCTATCATTGCCATGGCAAGTTTGGAACTTGGAAGTAGTAGGTATAGATGTTGTATCTGTATTATGTGGTTGAGAGATGGATATTAAATTTTGCAGTTAATGATCTGGTTAGTGGTTAGATCAACAATTTATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00272	5937	14698	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000272s00017835.1	PF13414.1	TPR_11	16	78	2.70E-18
Glyur000272s00017835.1	PF00515.23	TPR_1	82	113	0.00011
Glyur000272s00017835.2	PF13414.1	TPR_11	16	78	2.70E-18
Glyur000272s00017835.2	PF00515.23	TPR_1	82	113	0.0001

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	28.378
SRR1783600	control	28.250
SRR1783602	moderate drought stress	22.573
SRR1811619	moderate drought stress	22.805

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	29.972
DRR006520	Root Summer glycyrrhizin high producing strain	29.778
DRR006521	Root Winter glycyrrhizin high producing strain	12.501
DRR006522	Root Winter glycyrrhizin high producing strain	11.777
DRR006523	Root Summer glycyrrhizin low producing strain	32.459
DRR006524	Root Summer glycyrrhizin low producing strain	32.647
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.196
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.111

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	19.148
SRR2868004	Drought Stress (root)	14.720
SRR2967015	Control (root)	13.552

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.312
SRR9715740	Leaf	7.410
SRR9715741	Leaf	8.261
SRR9715739	Root	1.718
SRR9715742	Root	9.657
SRR9715743	Root	6.406

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	30.565
SRR8749028	MeJA induced 9h	12.510
SRR8749029	MeJA induced 9h	14.169
SRR8749030	Uninduced	6.153
SRR8749031	Uninduced	3.995
SRR8749032	Uninduced	4.904

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	16.091
SRR8400027	Control - Root	16.830