Gene detail information of Glyur000271s00015182 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G40010.1 | 6.00E-32 | AAA-ATPase 1 |
| NR | XP_003554259.2 | 2.71E-60 | PREDICTED: ATP-dependent zinc metalloprotease YME1L1-like [Glycine max] |
| trEMBL | tr|I1N614|I1N614_SOYBN | 1.00E-60 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G02180.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00271 | 221264 | 222081 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000271s00015182.1 | PF14363.1 | AAA_assoc | 37 | 130 | 5.10E-24 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.464 |
| SRR1783600 | control | 5.608 |
| SRR1783602 | moderate drought stress | 7.945 |
| SRR1811619 | moderate drought stress | 7.440 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.862 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.012 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.223 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.122 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.528 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.896 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.003 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.316 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.125 |
| SRR2868004 | Drought Stress (root) | 0.008 |
| SRR2967015 | Control (root) | 0.151 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.016 |
| SRR9715740 | Leaf | 0.015 |
| SRR9715741 | Leaf | 0.037 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.044 |
| SRR9715743 | Root | 0.029 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.405 |
| SRR8749028 | MeJA induced 9h | 0.016 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.010 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.829 |
| SRR8400027 | Control - Root | 0.649 |