Gene detail

Gene detail information of Glyur000271s00015181

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G28580.1	5.00E-118	P-loop containing nucleoside triphosphate hydrolases superfamily protein
NR	XP_010029261.1	1.49E-170	PREDICTED: probable mitochondrial chaperone BCS1-B [Eucalyptus grandis]
COG	YP_591316.1	1.00E-11	ATPase AAA [Candidatus Koribacter versatilis Ellin345]
Swissprot	tr\|Q9SL67\|PRS4B_ARATH	1.00E-06	26S proteasome regulatory subunit 4 homolog B
trEMBL	tr\|A0A059AQ89\|A0A059AQ89_EUCGR	6.00E-171	Uncharacterized protein {ECO:0000313\|EMBL:KCW56147.1}

Sequence

Transcript Sequence

>Glyur000271s00015181.1
ATGGCTAGCATCATGTTTGTGTATGCCATGTATGAGCAATTCTTCCCATACCATCTTCGCACCTANGTTAGAAAACACACAACAAAATTGACCAACCTCATGTACCCTTACATCCAAATCACCTTCCCTGAGCTCTCAGGGGAGCGCCTCAAGCGCAGTGAAGCCTACACANCCATCCAAACATATCTCAGTGCGAACTCCTCACAAAGAGCCAGAAGGCTCAAAGCTGAAGTTGTCAAAGATAGNCAAACCCCATTAGTCCTTAGCATGGAGGACAATGAGGAAATCACTGANGAGTTCAAAGGGATCAAAGTTTGGTGGAGTGCAAACCACANAGTCCCAAAAACACAGTCTTTTTCATGGTACCCTTCTTCACATGAAAGGAAGTACTTGACACTCACGTTCCATAGANGCCACCGTGACATCATCACATCCTCTTACATCCAACATGTGTTGAATGAAGGGAAGGCAATTTCCACGAAGAATAGACAACTGAAGCTTTACACAAACAATCCCAGCAATGATTGGCTTGGAAACGTGGGGACTGGGAAATCAACCATGATAGCTGCAATTGCCAATTTCATGAACTATGATGTGTATGATCTTGAGTTGACTGCAGTCAAAGACAACACTGAGCTTAGAAGACTCTTGATTGAGACATCGAGCAAGTCAATCATAGTGATTGAGGACATTGATTGTTCTCTTGATCTCACGGGACAAAGGAAGAAGAAGGAGAAGGAGAAGGACGAGGACGAAGAGGAAGAGGGTAAAAAGAAGAATCCTGCAAAGAAAGCTGAGGAGGAAGAGAACAAAGGGAGTAAGGTGACACTTTCTGGGTTGTTGAATTTCATTGATGGGATTTGGTCAGCTTGTGGTGGAGAGAGGATCATAATTTTCACAACAAACTTTGTGGACAAACTTGACCCTGCTTTGATNAGGAGGGGAAGGATGGACAAGCACATTGAGTTGTCCTATTGTTGCTATGAAGCATTCAAGGTGCTTGCTAAGAACTACTTGGATNTTGTTGATGAGTCACATGGTTTGTTTCCAACTATTGAGANGTTGTTGGGTGAGACCAACATGACACCTGCTGATGTTGCTGAGAATCTTATGCCAAAGTCNATCACTGAGGATTNGGAGAGTTGTTTGGAGAATTTGGTCCAATCTCTTGAGGTGGAAAAGAAGAAGCAGGAAGAGGAGAAGGCAAAGAAAAAGGCTGAAGAGGAGGAGGAAGCAAAGAAAAAGGGTGAGAAAGACAAAGAAGAGGTGAAAGCTAATGGAAAATCTGTGGAGGAAGTGAAAGAGAATGGTGTCATTCACTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00271	212098	213723	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000271s00015181.1	PF14363.1	AAA_assoc	14	109	4.20E-23
Glyur000271s00015181.1	PF00004.24	AAA	178	324	2.30E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.222
SRR1783600	control	7.487
SRR1783602	moderate drought stress	4.813
SRR1811619	moderate drought stress	4.845

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	14.704
DRR006520	Root Summer glycyrrhizin high producing strain	16.983
DRR006521	Root Winter glycyrrhizin high producing strain	3.791
DRR006522	Root Winter glycyrrhizin high producing strain	3.152
DRR006523	Root Summer glycyrrhizin low producing strain	27.210
DRR006524	Root Summer glycyrrhizin low producing strain	23.492
DRR006525	Leaf Summer glycyrrhizin high producing strain	404.203
DRR006526	Leaf Summer glycyrrhizin high producing strain	399.267

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	74.303
SRR2868004	Drought Stress (root)	127.600
SRR2967015	Control (root)	134.691

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	396.567
SRR9715740	Leaf	277.227
SRR9715741	Leaf	359.750
SRR9715739	Root	0.620
SRR9715742	Root	21.542
SRR9715743	Root	19.214

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.030
SRR8749028	MeJA induced 9h	7.380
SRR8749029	MeJA induced 9h	5.622
SRR8749030	Uninduced	16.201
SRR8749031	Uninduced	5.286
SRR8749032	Uninduced	7.949

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	21.566
SRR8400027	Control - Root	49.655