Gene detail

Gene detail information of Glyur000271s00015177.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G28480.1	4.00E-118	Oxoglutarate/iron-dependent oxygenase
NR	XP_003543632.1	0	PREDICTED: prolyl 4-hydroxylase subunit alpha-1-like [Glycine max]
COG	YP_001791681.1	1.00E-48	procollagen-proline dioxygenase [Leptothrix cholodnii SP-6]
Swissprot	tr\|Q8L970\|P4H7_ARATH	1.00E-150	Probable prolyl 4-hydroxylase 7 (Precursor)
trEMBL	tr\|I1LWH3\|I1LWH3_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G04940.1}

Sequence

Transcript Sequence

>Glyur000271s00015177.1
CAGTTTTCTCCAAAATAAAAACCCGTTCCTTCCCTTGTAAAGGAACCTTCGAGAAAGAGGGATTGAGGAGTAGGGAGGTTTCTCAATTTCTCAAAGGGACATTCACATTCACATTCACATTAGAAACGGACAGAGGAGCTGCTGAATCAAATCTGGTCGGTGGCTTTGTGGAATTGTCCGAAAACGACAAAGGAAAAACAAAACTACTCTCTCTCTCCCTCTCTCTGAGTTCTATCTTCAATTCAATTACANAACATTACACCCTTCTCTCTGATTCAGTACCAAAATAATCTCTTCAGCACCATGGTTCATTACCGTTTTCTCCCTCTCTTACTCTGTTTCCTCTGTTTCCTCTCTGATCTCTCCGTTTCCTCAATTCGATTGCCCAGCTTGGGTGAAGATAAGAAAACAACGCATGGNTCGGTGTTTGGTGGCTCTTCAGTGAAGTTTGATCCCACACGGGTCACTCAGCTCTCGTGGCGTCCCAGGGCTTTTCTATACAAGGGATTTTTATCTGAGAAGGAATGTGACCATCTTATAACGCTGGCCAAGGATAAGCTGGAGAAGTCTATGGTGGCGGATAATGAATCCGGTAAAAGTATAGAGAGTGAAGTCAGAACGAGTTCTGGGATGTTTCTTAACAAGGCACAGGATGAAATAGTTGCTGANATTGAAGCCCGAATCGCCACATGGACATTCCTTCCCATAGAGAATGGGGAGTCTATGCAAGTATTGCACTATGAGCATGGCCAGAAGTACGAACCACATTTTGACTACTTCCATGACAAGGCTAATCAAATTCTTGGTGGTCATAGGGTTGCCACTGTGTTGATGTATTTGTCTAATGTTGAGAAGGGTGGGGAAACAATTTTTCCCAATGCCGAGGCNAAATTGACACAGCCAAAAGATGAGAGCTGGTCTGAATGTGCTCACAAAGGATATGCAGTAAAACCCGCAAAGGGTGATGCCTTGCTATTCTTCAGTCTTCATCTTGACGCAACCACGGATACTAAAAGCTTGCACGGAAGCTGTCCGGTGATTGAGGGCGAGAAGTGGTCNGCAACCAAGTGGATTCATGTGAGTGACTTTGACAAACCATTATCATCGAGGCAATTAGAGGATAATGGAGACTGTGTTGATGAGAATGAGAATTGCTCTAGGTGGGCTAAAGTAGGGGAATGTGAGAAGAACCCAATTTATATGGTTGGTAAGGAAGGACTCAAGGGAAAATGTATGAAGAGTTGCAATGTTTGCTCTTCTTAGGGAGAGACCTCATCACAATTTCTATGCTCTATAATGCATGTAGATCAGTTATACTTTGTCAAATATCTTGTATATAATATTAACATTCATTTTTGCTGAACTGCAACATGGAACCCCTGAAGTAACTTATCAACACAGCTGTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00271	198742	202565	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00472	P4HA	EC:1.14.11.2	Arginine and proline metabolism	map00330

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0005506 iron ion binding

GO:0016491 oxidoreductase activity

GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen

GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors

GO:0031418 L-ascorbic acid binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000271s00015177.1	PF13640.1	2OG-FeII_Oxy_3	141	258	8.40E-14
Glyur000271s00015177.1	PF01549.19	ShK	277	317	0.00042

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	22.047
SRR1783600	control	21.907
SRR1783602	moderate drought stress	16.873
SRR1811619	moderate drought stress	17.005

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	34.573
DRR006520	Root Summer glycyrrhizin high producing strain	34.950
DRR006521	Root Winter glycyrrhizin high producing strain	49.545
DRR006522	Root Winter glycyrrhizin high producing strain	48.268
DRR006523	Root Summer glycyrrhizin low producing strain	36.244
DRR006524	Root Summer glycyrrhizin low producing strain	36.400
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.505
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.272

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	36.679
SRR2868004	Drought Stress (root)	38.214
SRR2967015	Control (root)	40.678

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	26.241
SRR9715740	Leaf	25.637
SRR9715741	Leaf	24.136
SRR9715739	Root	22.607
SRR9715742	Root	28.788
SRR9715743	Root	26.245

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	37.737
SRR8749028	MeJA induced 9h	58.097
SRR8749029	MeJA induced 9h	52.449
SRR8749030	Uninduced	10.610
SRR8749031	Uninduced	4.869
SRR8749032	Uninduced	11.004

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	41.032
SRR8400027	Control - Root	41.611