Gene detail information of Glyur000271s00015169 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G28450.1 | 0 | Leucine-rich repeat protein kinase family protein |
| NR | XP_004489358.1 | 0 | PREDICTED: probable inactive receptor kinase At1g27190-like [Cicer arietinum] |
| COG | YP_001192956.1 | 5.00E-15 | two component regulator [Flavobacterium johnsoniae UW101] |
| Swissprot | tr|O04567|Y1719_ARATH | 0 | Probable inactive receptor kinase At1g27190 (Precursor) |
| trEMBL | tr|G7KK02|G7KK02_MEDTR | 0 | LRR receptor-like kinase {ECO:0000313|EMBL:AES74641.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00271 | 151846 | 153675 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | PPC:1.12.1 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| -- |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000271s00015169.1 | PF08263.7 | LRRNT_2 | 29 | 70 | 0.00012 |
| Glyur000271s00015169.1 | PF00560.28 | LRR_1 | 101 | 120 | 0.46 |
| Glyur000271s00015169.1 | PF00560.28 | LRR_1 | 127 | 148 | 0.62 |
| Glyur000271s00015169.1 | PF07714.12 | Pkinase_Tyr | 327 | 577 | 3.00E-28 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 21.701 |
| SRR1783600 | control | 23.698 |
| SRR1783602 | moderate drought stress | 24.875 |
| SRR1811619 | moderate drought stress | 25.028 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 26.426 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 27.391 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 23.669 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 22.512 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 52.365 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 53.911 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 15.565 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 14.562 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 66.657 |
| SRR2868004 | Drought Stress (root) | 87.502 |
| SRR2967015 | Control (root) | 95.823 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 25.217 |
| SRR9715740 | Leaf | 20.930 |
| SRR9715741 | Leaf | 31.595 |
| SRR9715739 | Root | 24.123 |
| SRR9715742 | Root | 30.923 |
| SRR9715743 | Root | 29.492 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 22.699 |
| SRR8749028 | MeJA induced 9h | 44.999 |
| SRR8749029 | MeJA induced 9h | 20.602 |
| SRR8749030 | Uninduced | 28.492 |
| SRR8749031 | Uninduced | 23.579 |
| SRR8749032 | Uninduced | 18.126 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 58.684 |
| SRR8400027 | Control - Root | 50.169 |