Gene detail

Gene detail information of Glyur000271s00015160.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G15020.2	SIN3-like 2
NR	XP_006603840.1	PREDICTED: paired amphipathic helix protein Sin3-like 2-like isoform X1 [Glycine max]
Swissprot	tr\|Q9LFQ3\|SNL2_ARATH	Paired amphipathic helix protein Sin3-like 2
trEMBL	tr\|I1N5Z6\|I1N5Z6_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G01920.1}

Sequence

Transcript Sequence

>Glyur000271s00015160.1
AAAAAACCCAAACCAAAACCAAAGTAAAAGAATTTTAAAACCATGGGCTTAGCAGTAGTTGTTATTATNCAAGGATTTGTTTCTTGGGTTTTAAACCCGACCCGACCCGTATTATATAGTAACCTGCAAAGAAGAACAAAACTCGAAGAAATTTCGACTTTCAATTCAACCCACCCACATAACATTCTTCACATGAACAAACACAACACACACAAGTCACAAACATTAAGCTATTTCCTCATAATAACCTCGTAACCTCGTTCATTGCTTCACATATAAATCACCTTAAAATGTTCAATTTTTATTCCATTTTGATTATTCTTTTTTAATCCCACCATGCTTCTTTCTGACTCCAAAATTTGAGTTTCGAGTTTTCAGAGTTTGCACGTACCACCGCTCCAAACCAAAGCCTTCTTCTTCTCCTCTCTGTGCAAATCTCGCTTTTCACTGTTTCCATTTCAATTTCAATCTCAATTTTCCTCCTTCGAACGTAAATAACGTAAGAGAGAGACACAATAAACCTCGTCCTTCATTCCTGGTCTCTTAACCTCTTACTTTGTTCTCTCCGATCAAACCCTTCACTGTTTTTTTTTTTGCCTTTTCCTTGTACCCCTTTTTTCCTATTGTCTCTCGGGAGATCCACCCGACTTGTTTTCCAGCAGAATTTTCCCGGGAAAATCTGGGAAACCGATAAAAGGATGAAGAGGGCAAGGGATGATATATACTCTGGCTCTGCTTCTCAATTCAAACGCCCCTTTGGTTCCTCACGTGGCGATTCCTATGGCCAAGCTCAAGTCCCTGGAGGGGGAGGAGGTGGAGGTGGTGGCGGAGGCGGTGTTGGCGGGGGAGGAGGTGGGGGAGCAACTACTTCCCAGAAACTGACTACCAATGATGCCTTATCNTATTTGAAGGAAGTAAAAGACATGTTTCAGGATCAAAGAGAAAAATATGACATGTTCCTTGAGGTCATGAAAGATTTCAAGGCTCAAAGGACTGACACTGCTGGTGTGATAGCAAGGGTGAAGGAACTATTCAAAGGGCACAACAATTTGATTTTTGGATTTAACACTTTCCTGCCAAAGGGATATGAGATAACACTTGANGAGGATGAAGCTCCTCCGAAGAAAACAGTTGAATTTGAAGAAGCTATTAGTTTTGTGAACAAGATAAAGAAACGATTCCAAAATGATGAGCATGTTTACAAATCATTCTTGGACATTTTGAATATGTACCGCAAAGAGCACAAGGACATTGGTGAGGTTTACAGTGAGGTTGCTATGCTTTTTAAGGACCACCGGGATCTGCTTGACGAGTTCACTAGATTCTTACCAGATACCTCTGCAGCACCTTCCACACAGCATGCTCCATTTGGTCGAAATTCAATGCAGCGCTATAATGAGCGGAGTTCTATAGCACCCATGGTGCGGCAAATGCAAGTCGACAAGGCACAACGTTACCGACAAAACAGACTTCCTTCACATGACCGTGATCGNGATTTGAGTGTTGAACGCCCTGAGCTGGATGATGACAAAACAATGATGAACATGCACAAGGAAATGAGGAAACGTGAGGGCAGGGAGAGAAGGATTCGTGATCAGGATGAGAGAGAACCTGATCTTGATAACAACAGGGATCTGAACACGCAACGTTTTTCTGACAAAAAGAAATCTGTTAAGAAGGCTGAAGGTTATGGGTTGGCTTCTGACTTTGCTGCTTATGAAGACAAAGATGCATTAAAGAGCATGTATAGTCAAGCATTCAGTTTCTGTGAGAAAGTCAAGGAGAAGTTGAGCAGTGTTGATGACTACCAAACATTCTTGAAGTGCCTTCACATTTTCAGCAGTGGAATAATAAAAAGGAATGATTTGCAAAATTTGGTAACCGATTTACTTGGAAAGCATTCTGATCTGATGGATGAATTCAATGATTTCTTGGAGCGTTGTGAAAATATTGATGGGTTCCTTGCTGGTGTCGTGAGTAAAAAGTCACTGTCTTCTGATGGTCATTTACCAAGATCATCAAAGTTGGAGGACAAAGACAGAGAGCTGAAGCGTGAGATGGATGGAGCTAAAGAGAAGGAAAGATACAAGGAGAAATACATGGGAAAATCCATTCAAGAACTTGACCTTAGTGACTGTAAACGTTGTACTCCCAGCTACCGGCTTCTACCTGCAGATTATCCAATTCCTANGGCTAGTCAGCGATCTGAGCTTGGTGCTCAAGTACTAAATGATCACTGGGTATCTGTGACTTCAGGAAGTGAGGATTACTCTTTCAAACATATGCGCAGGAATCAATATGAAGAAAGCTTGTTCAGATGTGAAGATGACAGGTTTGAGCTGGACATGTTATTAGAGTCCGTGAGTTCAGCTGCTAAACGTGCAGAGGAATTGTATAACAACATTAATGAAAATAAGATCAATGTGGAGAGTCTGAGTCGTCTTGAAGACCACTTCACTGTTCTAAATATAAGGTGCATTGAACGTCTTTATGGTGACCATGGTCTTGACGTCTTAGACATACTGCGGAAGAACCCAACTCATGCTCTGCCTGTAATATTGACTCGATTGAAGCAGAAACAAGAGGAGTGGACTTTGGTGGCTGAGATTAAAGAAATTAAAGAGAAGCAGCAGAAAGAGGATGACATTCTTCAGTCTATTGCCGCTGGAAGTAAACAGCCTCTAATTCCACATCTGGAATTTGAATATTCTGATGCTGGAATTCATGAAGACCTGTACAAACTTGTTCGGTATTCATGTGAGGAGGTATTCTCAAGCAAAGAATTATTAAATAAAATTCTGAGGCTCTGGAGTACCTTCTTGGAGCCGATGCTTGGTCTTACTTCCCAATCGCACGGGACAGAAAGGGTAGAGGACAGGAAAGCAGGGAACAATGTACGCAATTCTGTTGCACCAAATGTAGGAGGTGATGGAAGCCCTCACAGAGACTCTATTTCAGTAAATGCAAGGTTACCAAAATCTGACAAGAATGAAGTTGATGGTAGAGTAAATGAAGTGAAGAATGCTCACCGGACTAGTGCAGCAACCAATGATAAAGAAAATGGTTCTGTTGGTGGTGAACATGTTTGTAGAGATGACCCCTCAATGGATAAAGGGCAGAAAAACGGTGAATGCAGTGATAAAGCCCCTGGGTTTGGTAAACAATTTGCGTCTGATGAACAAGGAGTTAAAAACAATGCTTCTATTGTAATTAGAGGAGAAAACAGCCAGAACAGAACCAACTTAGATGTGCCTCAAGGATCTGTCCTCACTCCATGCCGACCTACTGATGCTGATGCCTCTATAGCCAAGTCTCAGAGTGTTAATGTACCTTTGGTGGAGGGATGTGACACTGCAGCTCCAGTACCAGTGGCCAATGGGGTGCCAGTTGAAAACAGTAAAGTTAAAAGCCATGAAGAATCCTCTGGGCCTTGCAAAATTGAAAAAGAAGAGGGTGAATTATCACCAAATGGTGACTCTGAGGAGGATAACTTTGTTGNCTATGGAGATTCAAATGCACAGTCAACGGCAAAGTCAAAGCACAATAGTGAAAGAAGGAAATATCAGTCTAGAAATGGAGAGGATGAATGCTGTCCAGAGGCTGGAGGTGATAATGATGCAGATGCTGATGATGAAGACAGTGAAAATGTTTCTGAAGCTGGTGAAGATGTCTCAGGCAGTGAGTCTGCTGGTGATGAATGCTTCCGGGAAGATCACGAGGAGGAGGAAGATGTAGAACATGATGATGTTGATGGTAAGGCTGAGAGTGAAGGTGAAGCTGATGGGACATGTGATGCACAAGCTGGAGGAGATGGCTCATCTTTGCCCTTGTCAGAGAGGTTCCTTTCGTCTGTGAAACCTCTTACAAAGCATGTATCAGCAGTTTCATCTGTTGAAGAGATGAAGGATTCAAGGGTGTTTTATGGAAATGATGATTTCTTTGTGCTTTTTAGGCTTCATCAAATTCTTTATGAAAGGATCTTATCTGCAAAAACAAATTCAATGAGTGCTGAAATGAAATGGAAATCAAAAGATGCTAGTTCCCCAGATCCTTATTCAAGATTTATGAATGCACTGTACAACTTGCTTGATGGATCTGCCGAGAATGCAAAGTTTGAAGATGAATGTCGAGCAATTATTGGGAACCAGTCTTATGTGTTATTCACATTGGACAAGTTAATATATAAATTGATTAGACAGCTTCAAACTGTTGCAACGGACGAGGTAGACAGCAAGCTTCTCCAGTTATACGAGTATGAAAAGTCTCGGAAACCTGGGAAATTAAACAATTCAGTATATCATGCAAACGCACATGTCATCATTCATGAGGAGAATATATATCGTTTTCAATGTTCCTCTACCCCCTCTCGGCTATCCATCCAGCTCATGGACAATATGATTGAAAAGCCCGAGTTTTCGGCTGTTTCTATTGATCCGAATTTTTCTTTTTATCTGCACAATGAATTTCTGTCTGTCTTTCCTGTCAAAAAGGAACCCCATGGCATTATCCTGCAAAGAAACAAACGCAAATACGGAGACTTAGATGATCTTTCCGCAATTTGCTCTGCAATGGATGGTGTTAAAATAATTAATGGATTGGAATGTAAGATAGCTTGCAGCTCATCCAAGATTTCATATGTTCTTGACACACAAGATTTTTTCTTCCGCCCGAGAAGGAGAAGACNAACATCATCAACGACGGCATCTTCCCGGTCTCGAAGGGAGAGAGAGGAAAGATACTGCAAATTGTTGCCATCCTCGTTAACGGTATCTTCAATGTGAAGAGTTGTTGTCTGACATCTATTTAAACAGCTGAAGAGACTCAGATACATACTTTTAATGTTTATATAAGAGCCTTGATGTGGCAACCTAGGAAGGAACCTTTGGGTTTAGCAAAATTTGATTTATTGTCATAATGTACTTGAAGAATTTCACATGAAAGTGGATAAGGGGAATATACATGGGAAATGTGTAATATGGTTGAGGTCACATGCATGGGTGCCACTCCTTTGTAAATAGCTTGCTTCATTATATATTTGTAGAATATTGTACCAAATTGATCTTGTTCTTCAATAGTTAGCAACACAGTTAATGTTGCTTCCTTCACTACAAGCTTGCATGGCAGAAG

Protein Sequence

>Glyur000271s00015160.1
MKRARDDIYSGSASQFKRPFGSSRGDSYGQAQVPGGGGGGGGGGGGVGGGGGGGATTSQKLTTNDALSYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTAGVIARVKELFKGHNNLIFGFNTFLPKGYEITLXEDEAPPKKTVEFEEAISFVNKIKKRFQNDEHVYKSFLDILNMYRKEHKDIGEVYSEVAMLFKDHRDLLDEFTRFLPDTSAAPSTQHAPFGRNSMQRYNERSSIAPMVRQMQVDKAQRYRQNRLPSHDRDRDLSVERPELDDDKTMMNMHKEMRKREGRERRIRDQDEREPDLDNNRDLNTQRFSDKKKSVKKAEGYGLASDFAAYEDKDALKSMYSQAFSFCEKVKEKLSSVDDYQTFLKCLHIFSSGIIKRNDLQNLVTDLLGKHSDLMDEFNDFLERCENIDGFLAGVVSKKSLSSDGHLPRSSKLEDKDRELKREMDGAKEKERYKEKYMGKSIQELDLSDCKRCTPSYRLLPADYPIPXASQRSELGAQVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRFELDMLLESVSSAAKRAEELYNNINENKINVESLSRLEDHFTVLNIRCIERLYGDHGLDVLDILRKNPTHALPVILTRLKQKQEEWTLVAEIKEIKEKQQKEDDILQSIAAGSKQPLIPHLEFEYSDAGIHEDLYKLVRYSCEEVFSSKELLNKILRLWSTFLEPMLGLTSQSHGTERVEDRKAGNNVRNSVAPNVGGDGSPHRDSISVNARLPKSDKNEVDGRVNEVKNAHRTSAATNDKENGSVGGEHVCRDDPSMDKGQKNGECSDKAPGFGKQFASDEQGVKNNASIVIRGENSQNRTNLDVPQGSVLTPCRPTDADASIAKSQSVNVPLVEGCDTAAPVPVANGVPVENSKVKSHEESSGPCKIEKEEGELSPNGDSEEDNFVXYGDSNAQSTAKSKHNSERRKYQSRNGEDECCPEAGGDNDADADDEDSENVSEAGEDVSGSESAGDECFREDHEEEEDVEHDDVDGKAESEGEADGTCDAQAGGDGSSLPLSERFLSSVKPLTKHVSAVSSVEEMKDSRVFYGNDDFFVLFRLHQILYERILSAKTNSMSAEMKWKSKDASSPDPYSRFMNALYNLLDGSAENAKFEDECRAIIGNQSYVLFTLDKLIYKLIRQLQTVATDEVDSKLLQLYEYEKSRKPGKLNNSVYHANAHVIIHEENIYRFQCSSTPSRLSIQLMDNMIEKPEFSAVSIDPNFSFYLHNEFLSVFPVKKEPHGIILQRNKRKYGDLDDLSAICSAMDGVKIINGLECKIACSSSKISYVLDTQDFFFRPRRRRXTSSTTASSRSRREREERYCKLLPSSLTVSSM

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00271	83608	94554	-

Gene family

Gene family	subfamily
Transcription Factors Family	Orphans

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000271s00015160.1	PF02671.16	PAH	81	127	7.30E-14
Glyur000271s00015160.1	PF02671.16	PAH	165	211	1.90E-19
Glyur000271s00015160.1	PF02671.16	PAH	368	412	7.60E-17
Glyur000271s00015160.1	PF08295.7	Sin3_corepress	479	574	2.10E-40

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	18.364
SRR1783600	control	18.354
SRR1783602	moderate drought stress	21.076
SRR1811619	moderate drought stress	20.886

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	21.717
DRR006520	Root Summer glycyrrhizin high producing strain	21.436
DRR006521	Root Winter glycyrrhizin high producing strain	32.506
DRR006522	Root Winter glycyrrhizin high producing strain	31.548
DRR006523	Root Summer glycyrrhizin low producing strain	29.980
DRR006524	Root Summer glycyrrhizin low producing strain	30.099
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.990
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.743

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	31.134
SRR2868004	Drought Stress (root)	41.037
SRR2967015	Control (root)	40.594

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	20.585
SRR9715740	Leaf	23.541
SRR9715741	Leaf	26.906
SRR9715739	Root	2.569
SRR9715742	Root	22.355
SRR9715743	Root	20.098

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	21.144
SRR8749028	MeJA induced 9h	46.076
SRR8749029	MeJA induced 9h	40.057
SRR8749030	Uninduced	37.808
SRR8749031	Uninduced	71.043
SRR8749032	Uninduced	53.756

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	35.614
SRR8400027	Control - Root	36.293