Gene detail

Gene detail information of Glyur000271s00015156.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G28340.1	2.00E-131	galacturonosyltransferase-like 10
NR	XP_003607050.1	0	Glycosyltransferase CAZy family GT8 [Medicago truncatula]
COG	YP_007062961.1	3.00E-14	LPS:glycosyltransferase [Synechococcus sp. PCC 6312]
Swissprot	tr\|Q9LHD2\|GATLA_ARATH	1.00E-162	Probable galacturonosyltransferase-like 10
trEMBL	tr\|G7KJH6\|G7KJH6_MEDTR	0	Uncharacterized protein {ECO:0000313\|EMBL:AFK41069.1}

Sequence

Transcript Sequence

>Glyur000271s00015156.1
ATGTTTCTTTCTAGATCAACTCTTTTTGTGTTCATCCTCTCANCTTCCCTTCTTCTCTTTCAAGCTAATGCTATTAGATCTATTCCCAACAAGATCACACAAAAGGGCTATGAAACTGAGGTTAAAGTTGATTCCTTTTTGCAATTCAAAGAGGCCNCAGAATACAGAAACCAGCAAAAGTGCACTGTAGTTGACAGCAACAATGTGAAATTGGTGTGTGATCCATCACTTGTTCATATTGCAATGACCCTTGATTGGGGCTACTTCAGAGGATCTATAGCAGCAGTGCATTCTGTTCTCAAACACACTTCTTGCCCCCAGAATCTGTTCTTTCACTTCATTGCATCAGATTCAAGATTGGAGAATAAAGATGAGTTTGCTAGGATTGTTCAGAGTTCATTCCCTTCTTTGAGATTCAAAGTCTATGTGTTCAAAAAAAGCCTAGTTGAGAATCTCATATCTCCTTCAATAAGGCAAGCACTTGAGAACCCTTTAAACTATGCAAGAAGCTACCTTGCTGATTTGCTTGAGCAATGTGTTGAAAGAGTGATATATTTGGATTCTGATGTCATAGTTGTTGATGACATTCAAGAGCTATGGAAGGTTCAACTAACAGGATCAAGAGTCATTGGTGCACCAGAATATTGTCATGCAAACTTCACCAGATATTTCTCCTATGAGTTTTGGTCAAGTCCTGAATTCTCTAAAGCCTTTGAAGGAAGAAAAAAGAGGCCTTGTTATTTCAACACTGGGGTTATGGTGATGGATTTGGTAAAGTGGAGAGCGAGTGAATATACAAGGAAGATTGAGAAATGGATGGAGATTCAAAAGGAGAGGAGGGTCTATAAGCTTGGTTCACTCCCTCCTTTTTTGATGGTTTTTGGTGGAGATGTTGAGGCTATTGAACATAGGTGGAACCAACATGGGCTTGGTGGGGACAATGTTGTCAATAGTTGTAGGAGTTTGCATCCTGGTCCAGTTAGNTTGATGCATTGGAGTGGTAAAGGGAAACCATGGGTAAGGCTTGATGCTAAGATGCCTTGCTCAGTTGATTATCTTTGGGCACCTTATGATCTATACATACCCCATGATCATCACACACATCATCATCACCAGCAGAGAAGTGCTATTGGCACAACAGATTCTTCATTTTTTTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00271	68199	69356	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT8

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

--

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000271s00015156.1	PF01501.15	Glyco_transf_8	79	342	8.80E-64

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.440
SRR1783600	control	2.301
SRR1783602	moderate drought stress	1.008
SRR1811619	moderate drought stress	0.942

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	116.073
DRR006520	Root Summer glycyrrhizin high producing strain	114.745
DRR006521	Root Winter glycyrrhizin high producing strain	0.505
DRR006522	Root Winter glycyrrhizin high producing strain	0.633
DRR006523	Root Summer glycyrrhizin low producing strain	58.227
DRR006524	Root Summer glycyrrhizin low producing strain	57.666
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.011
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.299

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	19.091
SRR2868004	Drought Stress (root)	72.516
SRR2967015	Control (root)	254.724

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	194.657
SRR9715740	Leaf	67.358
SRR9715741	Leaf	151.720
SRR9715739	Root	106.210
SRR9715742	Root	160.128
SRR9715743	Root	149.907

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	194.558
SRR8749028	MeJA induced 9h	224.191
SRR8749029	MeJA induced 9h	151.306
SRR8749030	Uninduced	172.352
SRR8749031	Uninduced	174.681
SRR8749032	Uninduced	112.554

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	39.817
SRR8400027	Control - Root	78.102