Gene detail

Gene detail information of Glyur000271s00015152

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G14940.1	1.00E-170	Major facilitator superfamily protein
NR	KHN34167.1	0	Putative peptide/nitrate transporter [Glycine soja]
COG	YP_002494545.1	2.00E-27	amino acid/peptide transporter [Anaeromyxobacter dehalogenans 2CP-1]
Swissprot	tr\|Q9LFR1\|PTR50_ARATH	0	Protein NRT1/ PTR FAMILY 5.8
trEMBL	tr\|I1N5Z2\|I1N5Z2_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G01880.1}

Sequence

Transcript Sequence

>Glyur000271s00015152.1
GCCAAACTGAGAAGAGAGGTGGTTGGTGAATTCACATTAATTGGTGGTGACCACAAANAAAGGCCAAAAACATGATCATGAGAGAGCAGAAGAACCCACTTTGGTTTGTTTTGTTTTTGATACCCTCTTAACTTCAGAGTGCAGGTTTGGATTGGTGGTTGCTTTCATTTTCTAGGATCATTTGGTGGTATAGCTCTTTATTATGGCCGGTGGACAGAAACTCCAGAGGCTCAACAAGTCATGCATTCTCCTCATAGCCATTGCAGGTATAGAGAGGTTTGCATTCAAAGGGGTAGCATCCAATTTGGTGACTTACCTAACTGATGTTGTGGATTTGAGCAACTCATCTGCAGCAAAGATGGTTAACAGCTGGGTTGGATTCACCTCCATAATGCCATTGTTGGTGGCACCCATTGCTGATGCTTATTGGCGTAAATATTCCACCATAATGGTCTCATCTTTCCTCTATGTTATGGGACTAGCAGCATTGACAACAACAGCACTAGCAAGGTCATGGCATCATAAAAACAGAACAATGTCTTCTTCATTTCTCTCTTTGTCTCTATACTTAATTTCATTAGGCCAAGGTGGATATAACCCATCTTTGCAAGCCTTTGGAGCAGACCAACTTGGTGATGAAGAAGAATTGCCATGTAGCACAGATGATAATAAAAGTTCCAACAGAAAAACTGTATTTTTTCAGTGGTGGTATTTTGGTGTTTGTGCTGGGAGCTTAATGGGTGTCACAGTCATGTCATACATCCAAGACACCTTTGGTTGGGTTTTAGGCTTTGCCATCCCTGCAATCTCAATGGTTTTTTCCATTTTGATTTTCTCTAGTGGGAGCACCATATATTCATATAAAAAGCATGATGGCCTTCAAGAAAAGAAGCCCTTCATGAACATGTTTCAAGCTATAAAAGCATCTGCATTGAAATGCTTCCATTGTCAAATTACCCTACCAAATGACAAGCTTGAAGAGAGACCCCTTTGTCATGAAAACTTGGAAAGCCTTAAGGCATTGAATAATAAGGATCCTAAAAGTAGCTTGTATCTGCTAGGAGCAAATGCCAAGGCTGTGCTGAGGCTCTTACCCATATGGACAATGCTTCTAATGTTTGCAGTGATTTTTCAGCAACCTGCCACATTCTTCACNAAGCAAGGCATGACAATGAAGAGGAACATTGGTGGGAACTTCAAGATCCCACCAGCAACACTCCAAAGTGCCATAACATTGTCCATAATACTATTGATGCCACTCTATGACAGAATCTTCATACCAATTGCTCAGGTGATCACAAGACAGGACAAAGGCATAAGTGTGATGCAAAGGATGGGAATTGGAATGGTGCTCTCAATCATAGCCATGATCATTGCAGCACTAGTTGAAATGAGAAGGCTTGAGATTGGAAGGCAAATGAGAACTGAAGGGCACTTATCACAAGAAGAATTAACAGTGCCATTAAGCATTTTCTGGTTGCTACCACAATACATTCTTCTTGGCATTTCAGATATTTTCACAGTTGTGGGGATGCAAGAGTTCTTTTATGGTGAAGTTCCCAATACAATGAGAACAATGGGGATTGCATTGTATACTAGTGTTTTTGGGGTTGGAAGCTTTGTGAGTGCACTGTTGATTACACTGGTTGAAGTGTACACAAGTTCTAAAGGGAAACCAAGTTGGTTCTGTGATGATATGGTTGAAGCCAGGTTGGACAATTACTATTGGCTTCTGGCNTGGTTAAGTTCTGTGAGCTTCTTGTTGTATGTACTGTTGTGTAAATATTACCACAGTAAAGAGTGATTCAGATAGTGAAAATTGAGTTTTTTTTTTTCG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00271	14213	18982	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006810 transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0005215 transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000271s00015152.1	PF00854.16	PTR2	79	252	2.40E-33
Glyur000271s00015152.1	PF00854.16	PTR2	290	466	1.60E-29

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.422
SRR1783600	control	5.404
SRR1783602	moderate drought stress	6.083
SRR1811619	moderate drought stress	5.994

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.120
DRR006520	Root Summer glycyrrhizin high producing strain	10.976
DRR006521	Root Winter glycyrrhizin high producing strain	0.304
DRR006522	Root Winter glycyrrhizin high producing strain	0.295
DRR006523	Root Summer glycyrrhizin low producing strain	6.869
DRR006524	Root Summer glycyrrhizin low producing strain	6.661
DRR006525	Leaf Summer glycyrrhizin high producing strain	29.564
DRR006526	Leaf Summer glycyrrhizin high producing strain	29.260

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	33.930
SRR2868004	Drought Stress (root)	60.365
SRR2967015	Control (root)	80.229

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	27.310
SRR9715740	Leaf	37.155
SRR9715741	Leaf	54.688
SRR9715739	Root	6.831
SRR9715742	Root	24.607
SRR9715743	Root	21.966

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.661
SRR8400027	Control - Root	9.746