Gene detail information of Glyur000270s00013309 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G14580.1 | 1.00E-53 | basic pathogenesis-related protein 1 |
| NR | XP_003593358.1 | 7.65E-90 | Pathogenesis-related protein 1a [Medicago truncatula] |
| COG | YP_007073493.1 | 1.00E-35 | hypothetical protein Lepto7376_4565 [Leptolyngbya sp. PCC 7376] |
| Swissprot | tr|P09042|PR1C_TOBAC | 7.00E-62 | Pathogenesis-related protein 1C (Precursor) |
| trEMBL | tr|G7IFD1|G7IFD1_MEDTR | 3.00E-90 | CAP, cysteine-rich secretory protein, antigen 5 {ECO:0000313|EMBL:AES63609.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00270 | 221846 | 222349 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000270s00013309.1 | PF00188.21 | CAP | 36 | 155 | 2.40E-21 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 94.395 |
| SRR1783600 | control | 96.897 |
| SRR1783602 | moderate drought stress | 132.866 |
| SRR1811619 | moderate drought stress | 131.995 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 110.238 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 107.425 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 157.089 |
| SRR2868004 | Drought Stress (root) | 33.804 |
| SRR2967015 | Control (root) | 45.291 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 471.040 |
| SRR9715740 | Leaf | 191.897 |
| SRR9715741 | Leaf | 440.746 |
| SRR9715739 | Root | 42.527 |
| SRR9715742 | Root | 105.983 |
| SRR9715743 | Root | 87.330 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.361 |
| SRR8749028 | MeJA induced 9h | 11.634 |
| SRR8749029 | MeJA induced 9h | 7.264 |
| SRR8749030 | Uninduced | 1.252 |
| SRR8749031 | Uninduced | 1.958 |
| SRR8749032 | Uninduced | 0.499 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 284.832 |
| SRR8400027 | Control - Root | 490.119 |