Gene detail information of Glyur000270s00013306 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G33720.1 | 2.00E-45 | CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein |
| NR | KHN33603.1 | 1.40E-93 | Basic form of pathogenesis-related protein 1 [Glycine soja] |
| COG | YP_007071119.1 | 9.00E-27 | hypothetical protein Lepto7376_1975 [Leptolyngbya sp. PCC 7376] |
| Swissprot | tr|P11670|PRB1_TOBAC | 4.00E-64 | Basic form of pathogenesis-related protein 1 (Precursor) |
| trEMBL | tr|I1ME52|I1ME52_SOYBN | 5.00E-94 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G06770.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00270 | 215047 | 215532 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000270s00013306.1 | PF00188.21 | CAP | 33 | 149 | 4.00E-21 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 201.625 |
| SRR1783600 | control | 207.275 |
| SRR1783602 | moderate drought stress | 31.189 |
| SRR1811619 | moderate drought stress | 28.129 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 126.330 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 124.902 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 60.434 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 62.666 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 96.068 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 93.164 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 238.099 |
| SRR2868004 | Drought Stress (root) | 53.850 |
| SRR2967015 | Control (root) | 74.909 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.287 |
| SRR9715740 | Leaf | 0.673 |
| SRR9715741 | Leaf | 1.367 |
| SRR9715739 | Root | 36.472 |
| SRR9715742 | Root | 16.631 |
| SRR9715743 | Root | 18.900 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 25.920 |
| SRR8749028 | MeJA induced 9h | 2.111 |
| SRR8749029 | MeJA induced 9h | 42.782 |
| SRR8749030 | Uninduced | 0.131 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 1.838 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 592.410 |
| SRR8400027 | Control - Root | 582.530 |