Gene detail

Gene detail information of Glyur000270s00013304

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G33700.1	3.00E-175	CBS domain-containing protein with a domain of unknown function (DUF21)
NR	XP_003531004.1	0	PREDICTED: DUF21 domain-containing protein At2g14520-like [Glycine max]
COG	YP_007984945.1	2.00E-38	membrane protein of unknown function [Candidatus Saccharimonas aalborgensis]
Swissprot	tr\|Q8VZI2\|Y4370_ARATH	0	DUF21 domain-containing protein At4g33700
trEMBL	tr\|I1KQT9\|I1KQT9_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G06780.1}

Sequence

Transcript Sequence

>Glyur000270s00013304.1
ATGGCGGTGGAGTATGAGTGCTGTGAAACTGAGTTTTTCATAAGAATAGTGATAATCGTGGTGCTTGTGATGTTTGCTGGGATGATGTCAGGGCTCACCTTAGGCCTCATGTCGTTGAGCCTTGTTGATCTTGAGGTCCTTGCTAAGTCTGGTTCCCCTCAGGATCGAAACCATGCCGAGAAGATATTGCCTGTTGTCAGAAATCAACATCTATTGCTTTGCACCCTTCTAATTTGCAATGCTGCAGCCATGGAGGCACTTCCNATCTTTCTTGATAGTCTTGTTGTTGCGTGGGGTGCTATATTGATTTCNGTGACATTAATTCTTCTGTTTGGTGAGATTATCCCACAATCGATTTGTTCTCGGTATGGTTTAGCAATTGGTGCAAAAGTGGCTCCAGTTGTCCGTGTTCTTGTGTGGATTTGTTTTCCTGTTGCTTATCCAATTAGCAAGTTGTTGGACTTTTTGCTGGGGCATCGACGTGAGGCCCTTTTCCGCAGAGCTGAATTGAAAACACTAGTGAATTTGCATGGTAATGAGGCTGGAAAAGGTGGAGAACTGACGCATGATGAAACAACTATCATTGCTGGGGCACTTGAACTCACNGAGAAGACAGCTGGTGATGCCATGACCCCTATAACTGAAACATTTTCTATTGATATTAATTCAAAACTTGATAGGGATGTGATGAATCTAATATTGGAGAAAGGGCATAGCAGAGTCCCTGTCTATTATGAGGAGCCTTCAAATATAATCGGACTTATCCTGGTCAAGAATTTATTGACAATTGACCCAGATGATGAAGCACCCGTGAAAAGTGTGACCATACGCAAAATACCAAGGGTTCCAGAAATGATGCCACTATATGATATTTTGAATGAGTTCCAGAAGGGCCATAGCCACATGGCTGTTGTTGTCAGACATTGTGACAAGACAAAGCAACAGTCTTCCTACAATAATGCCAGTGATTCAGTGAGAGAAGTGAAGGTGAATATTGAAGGTGAGGGAGAGAAGGGTCCCCAAGAGAAAATGTTGAAAAACAAGAGGCAACTCCATAAGATGAAAAGCTTACCAAACGCAAGCAGTAACTATTCGCATAGGAGTGGTTCTCGGAGCAAGAAATGGTCACAAAATATGTACTCAGATATTTTGGAGATAGATGGAAATTCAATCCCAAAGCTCCCCNAAAAAGAAGAAGCTGTGGGAATAATTTCGATGGAAGATGTCATTGAAGAGCTTTTGCAGGAGGAGATATTTGATGAGACAGATCATCATTTTGAAGACTCATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00270	200308	203425	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000270s00013304.1	PF01595.15	DUF21	15	180	3.80E-37
Glyur000270s00013304.1	PF00571.23	CBS	206	263	6.60E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.277
SRR1783600	control	1.375
SRR1783602	moderate drought stress	4.473
SRR1811619	moderate drought stress	4.607

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.779
DRR006520	Root Summer glycyrrhizin high producing strain	4.551
DRR006521	Root Winter glycyrrhizin high producing strain	86.793
DRR006522	Root Winter glycyrrhizin high producing strain	84.930
DRR006523	Root Summer glycyrrhizin low producing strain	3.277
DRR006524	Root Summer glycyrrhizin low producing strain	3.270
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.790
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.789

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.700
SRR2868004	Drought Stress (root)	7.681
SRR2967015	Control (root)	7.645

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.193
SRR9715740	Leaf	0.433
SRR9715741	Leaf	0.643
SRR9715739	Root	0.593
SRR9715742	Root	2.533
SRR9715743	Root	2.176

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.963
SRR8749028	MeJA induced 9h	4.276
SRR8749029	MeJA induced 9h	0.761
SRR8749030	Uninduced	0.831
SRR8749031	Uninduced	0.305
SRR8749032	Uninduced	0.327

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	15.823
SRR8400027	Control - Root	16.360