Gene detail information of Glyur000270s00013301.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G58440.1 | 3.00E-177 | FAD/NAD(P)-binding oxidoreductase family protein |
| NR | XP_006583782.1 | 0 | PREDICTED: squalene monooxygenase-like isoform X2 [Glycine max] |
| COG | YP_004346032.1 | 4.00E-73 | Squalene monooxygenase [Fluviicola taffensis DSM 16823] |
| Swissprot | tr|O48651|ERG1_PANGI | 0 | Squalene monooxygenase |
| trEMBL | tr|A0A075DZG2|A0A075DZG2_ASTME | 0 | Squalene epoxidase {ECO:0000313|EMBL:AHY94896.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00270 | 188496 | 191976 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K00511 | SQLE, ERG1 | EC:1.14.14.17 | Steroid biosynthesis | map00100 |
| Sesquiterpenoid and triterpenoid biosynthesis | map00909 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000270s00013301.1 | PF08491.5 | SE | 211 | 346 | 6.20E-58 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.105 |
| SRR1783600 | control | 0.043 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.073 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.852 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.018 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.000 |
| SRR2868004 | Drought Stress (root) | 0.095 |
| SRR2967015 | Control (root) | 0.027 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.952 |
| SRR9715740 | Leaf | 3.336 |
| SRR9715741 | Leaf | 1.201 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.060 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.208 |
| SRR8749028 | MeJA induced 9h | 0.634 |
| SRR8749029 | MeJA induced 9h | 0.258 |
| SRR8749030 | Uninduced | 0.365 |
| SRR8749031 | Uninduced | 0.223 |
| SRR8749032 | Uninduced | 0.255 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.011 |
| SRR8400027 | Control - Root | 0.000 |